Variant report
| Variant | rs10022681 |
|---|---|
| Chromosome Location | chr4:97114273-97114274 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:97103707..97106316-chr4:97112297..97115167,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10856920 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12498214 | 1.00[ASN][1000 genomes] |
| rs12500252 | 1.00[ASN][1000 genomes] |
| rs12507410 | 1.00[ASN][1000 genomes] |
| rs12509073 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12510118 | 1.00[ASN][1000 genomes] |
| rs1395200 | 1.00[ASN][1000 genomes] |
| rs1506314 | 0.81[ASN][1000 genomes] |
| rs17025428 | 1.00[ASN][1000 genomes] |
| rs1857891 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28418878 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28600943 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28626069 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57196872 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62316816 | 0.84[EUR][1000 genomes] |
| rs6532594 | 0.94[EUR][1000 genomes] |
| rs6815914 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6817554 | 1.00[ASN][1000 genomes] |
| rs6830209 | 1.00[ASN][1000 genomes] |
| rs6837318 | 0.81[CEU][hapmap] |
| rs6852164 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7682601 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9884371 | 1.00[ASN][1000 genomes] |
| rs9998679 | 1.00[ASN][1000 genomes] |
| rs9998994 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9999006 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830013 | chr4:97033125-97204291 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003868 | chr4:97068155-97222544 | Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv470057 | chr4:97104880-97311657 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv461589 | chr4:97104881-97311657 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv594916 | chr4:97104881-97311657 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97114200-97114800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
