Variant report

Variant	rs57196872
Chromosome Location	chr4:97172976-97172977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10007639	1.00[ASN][1000 genomes]
rs10022681	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856920	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498214	1.00[ASN][1000 genomes]
rs12500252	1.00[ASN][1000 genomes]
rs12507410	1.00[ASN][1000 genomes]
rs12509073	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510118	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512573	1.00[ASN][1000 genomes]
rs1395200	1.00[ASN][1000 genomes]
rs1506314	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17025428	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857891	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418878	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433709	1.00[ASN][1000 genomes]
rs28526823	1.00[ASN][1000 genomes]
rs28600943	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626069	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28790115	1.00[ASN][1000 genomes]
rs61308071	0.88[EUR][1000 genomes]
rs62316816	0.97[EUR][1000 genomes]
rs62316820	0.88[EUR][1000 genomes]
rs62316821	0.88[EUR][1000 genomes]
rs62316822	0.88[EUR][1000 genomes]
rs62316829	0.88[EUR][1000 genomes]
rs62316831	0.87[EUR][1000 genomes]
rs62316847	1.00[ASN][1000 genomes]
rs6532594	0.86[EUR][1000 genomes]
rs6815032	0.88[EUR][1000 genomes]
rs6815914	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817554	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830209	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852164	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682601	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307172	1.00[ASN][1000 genomes]
rs9884206	1.00[ASN][1000 genomes]
rs9884371	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884399	1.00[ASN][1000 genomes]
rs9997459	1.00[ASN][1000 genomes]
rs9998679	1.00[ASN][1000 genomes]
rs9998994	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97172200-97183200	Weak transcription	Gastric	stomach

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