Variant report

Variant	rs6532594
Chromosome Location	chr4:97114706-97114707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10022681	0.94[EUR][1000 genomes]
rs10856920	0.80[EUR][1000 genomes]
rs11097495	0.84[AMR][1000 genomes]
rs12509073	0.80[EUR][1000 genomes]
rs12510118	0.80[EUR][1000 genomes]
rs17025428	0.80[EUR][1000 genomes]
rs1857891	0.85[EUR][1000 genomes]
rs28418878	0.81[EUR][1000 genomes]
rs28600943	0.97[EUR][1000 genomes]
rs28626069	0.81[EUR][1000 genomes]
rs57196872	0.86[EUR][1000 genomes]
rs61308071	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62316816	0.90[EUR][1000 genomes]
rs62316820	0.85[EUR][1000 genomes]
rs62316821	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62316822	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62316829	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62316831	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6815032	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6815914	0.81[EUR][1000 genomes]
rs6852164	0.95[EUR][1000 genomes]
rs7682601	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6532594	RAP1GDS1	cis	parietal	SCAN
rs6532594	ADH1A	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97114200-97114800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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