Variant report
| Variant | rs62316846 |
|---|---|
| Chromosome Location | chr4:97397575-97397576 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10001071 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10007639 | 0.96[EUR][1000 genomes] |
| rs10016381 | 0.99[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10018992 | 0.96[EUR][1000 genomes] |
| rs12512170 | 0.94[EUR][1000 genomes] |
| rs12512573 | 0.99[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1506314 | 0.84[EUR][1000 genomes] |
| rs28418878 | 0.81[EUR][1000 genomes] |
| rs28433709 | 0.96[EUR][1000 genomes] |
| rs28526823 | 0.94[EUR][1000 genomes] |
| rs28626069 | 0.81[EUR][1000 genomes] |
| rs28787639 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28790115 | 0.96[EUR][1000 genomes] |
| rs61308071 | 0.84[EUR][1000 genomes] |
| rs62316820 | 0.84[EUR][1000 genomes] |
| rs62316821 | 0.84[EUR][1000 genomes] |
| rs62316822 | 0.84[EUR][1000 genomes] |
| rs62316829 | 0.84[EUR][1000 genomes] |
| rs62316831 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs62316847 | 0.96[EUR][1000 genomes] |
| rs62316848 | 0.99[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62316858 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6815032 | 0.84[EUR][1000 genomes] |
| rs6815914 | 0.81[EUR][1000 genomes] |
| rs6817554 | 0.87[EUR][1000 genomes] |
| rs6830209 | 0.87[EUR][1000 genomes] |
| rs6840466 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9307172 | 0.96[EUR][1000 genomes] |
| rs9884206 | 0.96[EUR][1000 genomes] |
| rs9884371 | 0.86[EUR][1000 genomes] |
| rs9884399 | 0.96[EUR][1000 genomes] |
| rs9997459 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879634 | chr4:97371381-97727113 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv879635 | chr4:97389090-97591085 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv1007650 | chr4:97393803-97485770 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3412800 | chr4:97395929-97399027 | ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:97397200-97399600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
