Variant report

Variant	rs62485223
Chromosome Location	chr7:136566836-136566837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136561220..136563776-chr7:136565469..136567978,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10488595	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488596	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488597	1.00[ASN][1000 genomes]
rs10954565	1.00[ASN][1000 genomes]
rs10954566	1.00[ASN][1000 genomes]
rs11763464	1.00[ASN][1000 genomes]
rs11771119	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530999	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532627	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532672	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533282	1.00[ASN][1000 genomes]
rs12536964	1.00[ASN][1000 genomes]
rs12537069	1.00[ASN][1000 genomes]
rs12537753	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537831	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538445	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670040	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13222744	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223210	1.00[ASN][1000 genomes]
rs13223738	1.00[ASN][1000 genomes]
rs13230245	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233131	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235508	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235822	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17409631	1.00[ASN][1000 genomes]
rs17409769	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487790	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494540	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494589	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34166421	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617713	1.00[ASN][1000 genomes]
rs34653588	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35641096	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784011	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007709	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485215	1.00[ASN][1000 genomes]
rs62485218	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485222	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541328	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541330	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136557000-136567800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
3	chr7:136561200-136569000	Enhancers	Fetal Heart	heart
4	chr7:136563200-136567000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:136565000-136567000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:136565000-136567800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:136565000-136567800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:136565200-136567800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:136565200-136575200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:136565800-136569000	Enhancers	Rectal Smooth Muscle	rectum
11	chr7:136566400-136570200	Enhancers	Colon Smooth Muscle	Colon
12	chr7:136566800-136567000	Enhancers	NHLF	lung
13	chr7:136566800-136567400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr7:136566800-136568000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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