Variant report

Variant	rs12536964
Chromosome Location	chr7:136554948-136554949
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC015987.1-7	chr7:136554552-136556710	NONHSAT123563

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10488595	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488596	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488597	1.00[ASN][1000 genomes]
rs10954565	1.00[ASN][1000 genomes]
rs10954566	1.00[ASN][1000 genomes]
rs11763464	1.00[ASN][1000 genomes]
rs11771119	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530999	1.00[ASN][1000 genomes]
rs12531447	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12532627	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532672	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533282	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534748	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12536604	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12536640	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12537069	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537753	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537831	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538445	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670040	0.85[AMR][1000 genomes]
rs13222744	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223210	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223738	1.00[ASN][1000 genomes]
rs13230245	1.00[ASN][1000 genomes]
rs13233131	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13233495	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13235508	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235822	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243456	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1424574	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17409631	1.00[ASN][1000 genomes]
rs17409769	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17487790	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494540	1.00[ASN][1000 genomes]
rs17494589	1.00[ASN][1000 genomes]
rs34166421	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617713	1.00[ASN][1000 genomes]
rs34636077	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34653588	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35310233	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35641096	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35784011	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007709	1.00[ASN][1000 genomes]
rs62485215	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485218	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485222	1.00[ASN][1000 genomes]
rs62485223	1.00[ASN][1000 genomes]
rs71541328	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541330	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136553000-136555200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
2	chr7:136553000-136555200	Active TSS	Right Ventricle	heart
3	chr7:136553000-136556200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr7:136553000-136556200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:136553000-136556200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:136553000-136556400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
8	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Kidney	kidney
9	chr7:136553000-136556400	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr7:136553000-136556600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr7:136553000-136556600	Active TSS	Fetal Heart	heart
12	chr7:136553000-136556600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
13	chr7:136553000-136556600	Active TSS	Left Ventricle	heart
14	chr7:136553000-136557000	Active TSS	Rectal Smooth Muscle	rectum
15	chr7:136553000-136558000	Active TSS	Right Atrium	heart
16	chr7:136553200-136555200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:136553200-136555200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr7:136553200-136555200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
19	chr7:136553200-136556000	Enhancers	Pancreas	Pancrea
20	chr7:136553200-136556200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr7:136553200-136556200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:136553200-136556400	Bivalent Enhancer	Liver	Liver
23	chr7:136553200-136556600	Active TSS	Colon Smooth Muscle	Colon
24	chr7:136553400-136555000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr7:136553400-136555200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:136553400-136555200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr7:136553400-136555200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
28	chr7:136553400-136555800	Bivalent/Poised TSS	Colonic Mucosa	Colon
29	chr7:136553400-136556000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr7:136553400-136556400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:136553600-136555200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr7:136553600-136555400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:136553600-136556000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr7:136553600-136556000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
35	chr7:136553800-136555200	Bivalent Enhancer	Fetal Brain Male	brain
36	chr7:136553800-136555400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
37	chr7:136553800-136555400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
38	chr7:136553800-136555800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr7:136554000-136555000	Flanking Active TSS	Placenta Amnion	Placenta Amnion
40	chr7:136554000-136555200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:136554000-136555600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
42	chr7:136554000-136556000	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr7:136554000-136556000	Bivalent Enhancer	Spleen	Spleen
44	chr7:136554200-136555000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
45	chr7:136554200-136555200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr7:136554200-136555200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:136554200-136555200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
48	chr7:136554200-136555200	Bivalent/Poised TSS	NHLF	lung
49	chr7:136554200-136555400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
50	chr7:136554200-136555600	Bivalent/Poised TSS	Esophagus	oesophagus

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