Variant report

Variant	rs71541328
Chromosome Location	chr7:136556285-136556286
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC015987.1-7	chr7:136554552-136556710	NONHSAT123563

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10488595	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488597	1.00[ASN][1000 genomes]
rs10954565	1.00[ASN][1000 genomes]
rs10954566	1.00[ASN][1000 genomes]
rs11763464	1.00[ASN][1000 genomes]
rs11771119	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530999	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531447	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12532627	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532672	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533282	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534748	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12536604	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12536640	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12536964	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537069	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537753	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537831	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538445	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670040	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13222744	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223210	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223738	1.00[ASN][1000 genomes]
rs13230245	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233131	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233495	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13235508	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235822	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243456	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1424574	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17409631	1.00[ASN][1000 genomes]
rs17409769	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487790	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494540	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494589	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34166421	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617713	1.00[ASN][1000 genomes]
rs34636077	0.83[AMR][1000 genomes]
rs34653588	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35310233	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35641096	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784011	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007709	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485215	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485218	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485222	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485223	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541330	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136553000-136556400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
3	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Kidney	kidney
4	chr7:136553000-136556400	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr7:136553000-136556600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr7:136553000-136556600	Active TSS	Fetal Heart	heart
7	chr7:136553000-136556600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
8	chr7:136553000-136556600	Active TSS	Left Ventricle	heart
9	chr7:136553000-136557000	Active TSS	Rectal Smooth Muscle	rectum
10	chr7:136553000-136558000	Active TSS	Right Atrium	heart
11	chr7:136553200-136556400	Bivalent Enhancer	Liver	Liver
12	chr7:136553200-136556600	Active TSS	Colon Smooth Muscle	Colon
13	chr7:136553400-136556400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:136554200-136558800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:136554800-136556400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:136555200-136556400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
17	chr7:136555200-136556400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:136555200-136556600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
19	chr7:136555400-136556400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr7:136555400-136556400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:136555400-136556400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:136555400-136556400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
23	chr7:136555400-136556600	Bivalent Enhancer	Fetal Brain Male	brain
24	chr7:136555400-136556600	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr7:136555400-136557200	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr7:136555600-136556400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr7:136555600-136556400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
28	chr7:136555600-136556600	Active TSS	Right Ventricle	heart
29	chr7:136555800-136556400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr7:136555800-136556400	Bivalent/Poised TSS	Fetal Stomach	stomach
31	chr7:136555800-136556400	Bivalent/Poised TSS	NH-A	brain
32	chr7:136556000-136556400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:136556000-136556400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
34	chr7:136556000-136556400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
35	chr7:136556000-136556400	Flanking Bivalent TSS/Enh	NHLF	lung
36	chr7:136556000-136556600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:136556000-136556600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
38	chr7:136556000-136556600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
39	chr7:136556000-136556600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
40	chr7:136556000-136556600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
41	chr7:136556200-136556400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
42	chr7:136556200-136556400	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
43	chr7:136556200-136556400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:136556200-136556400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:136556200-136556400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:136556200-136556400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr7:136556200-136556400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr7:136556200-136556400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr7:136556200-136556400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr7:136556200-136556400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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