Variant report

Variant	rs12538445
Chromosome Location	chr7:136556860-136556861
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10488595	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488596	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488597	1.00[ASN][1000 genomes]
rs10954565	1.00[ASN][1000 genomes]
rs10954566	1.00[ASN][1000 genomes]
rs11763464	1.00[ASN][1000 genomes]
rs11771119	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530999	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531447	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12532627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534748	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12536604	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12536640	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12536964	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537069	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670040	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13222744	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223738	1.00[ASN][1000 genomes]
rs13230245	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233131	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13233495	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13235508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243456	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1424574	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17409631	1.00[ASN][1000 genomes]
rs17409769	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494540	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494589	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34166421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617713	1.00[ASN][1000 genomes]
rs34636077	0.88[AMR][1000 genomes]
rs34653588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35310233	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35641096	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007709	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485215	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485222	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485223	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541328	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541330	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136553000-136557000	Active TSS	Rectal Smooth Muscle	rectum
2	chr7:136553000-136558000	Active TSS	Right Atrium	heart
3	chr7:136554200-136558800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:136555400-136557200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr7:136556400-136557400	Active TSS	Fetal Stomach	stomach
6	chr7:136556600-136557000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr7:136556600-136557000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:136556600-136557000	Flanking Active TSS	Fetal Heart	heart
9	chr7:136556600-136557000	Enhancers	NHLF	lung
10	chr7:136556600-136557200	Flanking Active TSS	Colon Smooth Muscle	Colon
11	chr7:136556600-136557600	Weak transcription	Right Ventricle	heart
12	chr7:136556800-136557000	Active TSS	Stomach Smooth Muscle	stomach

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