Variant report

Variant	rs12531447
Chromosome Location	chr7:136549674-136549675
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10488595	0.83[AMR][1000 genomes]
rs10488596	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12532627	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12532672	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12533282	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12534748	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536604	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536640	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536964	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12537069	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12537753	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12537831	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12538445	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13222744	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13223210	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13233495	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235508	0.83[AMR][1000 genomes]
rs13235822	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13243456	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424574	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17487790	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34166421	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34636077	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34653588	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35310233	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784011	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62485215	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62485218	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71541328	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7797223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136548000-136550000	Enhancers	Rectal Smooth Muscle	rectum
2	chr7:136548800-136551800	Enhancers	Fetal Heart	heart
3	chr7:136549000-136553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:136549200-136550800	Weak transcription	Colon Smooth Muscle	Colon

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