Variant report

Variant	rs13243456
Chromosome Location	chr7:136552288-136552289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10488595	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10488596	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11771119	0.83[AMR][1000 genomes]
rs12531447	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532627	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12532672	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12533282	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12534748	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536604	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536640	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536964	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12537069	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12537753	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12537831	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12538445	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12670040	0.85[AMR][1000 genomes]
rs13222744	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13223210	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13233131	0.85[AMR][1000 genomes]
rs13233495	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235508	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13235822	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1424574	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17409769	0.88[AMR][1000 genomes]
rs17487790	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34166421	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34636077	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34653588	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35310233	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35641096	0.88[AMR][1000 genomes]
rs35784011	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62485215	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62485218	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71541328	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71541330	0.88[AMR][1000 genomes]
rs7797223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv3407970	chr7:136551437-136553985	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3409315	chr7:136551562-136553810	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3436557	chr7:136552012-136553510	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136549000-136553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:136551600-136553000	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:136551600-136553000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:136551800-136553000	Weak transcription	Fetal Heart	heart

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