Variant report

Variant	rs12537069
Chromosome Location	chr7:136555320-136555321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC015987.1-7	chr7:136554552-136556710	NONHSAT123563

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10488595	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488596	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488597	1.00[ASN][1000 genomes]
rs10954565	1.00[ASN][1000 genomes]
rs10954566	1.00[ASN][1000 genomes]
rs11763464	1.00[ASN][1000 genomes]
rs11771119	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12530999	1.00[ASN][1000 genomes]
rs12531447	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12532627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533282	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534748	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12536604	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12536640	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12536964	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670040	0.88[AMR][1000 genomes]
rs13222744	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223210	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223738	1.00[ASN][1000 genomes]
rs13230245	1.00[ASN][1000 genomes]
rs13233131	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13233495	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13235508	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13235822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243456	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1424574	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17409631	1.00[ASN][1000 genomes]
rs17409769	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17487790	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494540	1.00[ASN][1000 genomes]
rs17494589	1.00[ASN][1000 genomes]
rs34166421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34617713	1.00[ASN][1000 genomes]
rs34636077	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34653588	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35310233	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35641096	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35784011	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36007709	1.00[ASN][1000 genomes]
rs62485215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485222	1.00[ASN][1000 genomes]
rs62485223	1.00[ASN][1000 genomes]
rs71541328	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71541330	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136553000-136556200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr7:136553000-136556200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:136553000-136556200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:136553000-136556400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
6	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Kidney	kidney
7	chr7:136553000-136556400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr7:136553000-136556600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:136553000-136556600	Active TSS	Fetal Heart	heart
10	chr7:136553000-136556600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
11	chr7:136553000-136556600	Active TSS	Left Ventricle	heart
12	chr7:136553000-136557000	Active TSS	Rectal Smooth Muscle	rectum
13	chr7:136553000-136558000	Active TSS	Right Atrium	heart
14	chr7:136553200-136556000	Enhancers	Pancreas	Pancrea
15	chr7:136553200-136556200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr7:136553200-136556200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:136553200-136556400	Bivalent Enhancer	Liver	Liver
18	chr7:136553200-136556600	Active TSS	Colon Smooth Muscle	Colon
19	chr7:136553400-136555800	Bivalent/Poised TSS	Colonic Mucosa	Colon
20	chr7:136553400-136556000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
21	chr7:136553400-136556400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:136553600-136555400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:136553600-136556000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:136553600-136556000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
25	chr7:136553800-136555400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr7:136553800-136555400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
27	chr7:136553800-136555800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
28	chr7:136554000-136555600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
29	chr7:136554000-136556000	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr7:136554000-136556000	Bivalent Enhancer	Spleen	Spleen
31	chr7:136554200-136555400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
32	chr7:136554200-136555600	Bivalent/Poised TSS	Esophagus	oesophagus
33	chr7:136554200-136555800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:136554200-136555800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:136554200-136558800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:136554400-136555400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:136554400-136555400	Bivalent Enhancer	Placenta	Placenta
38	chr7:136554400-136555600	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:136554600-136555400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr7:136554600-136555400	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:136554600-136555600	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
42	chr7:136554600-136555800	Flanking Bivalent TSS/Enh	NH-A	brain
43	chr7:136554600-136556200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
44	chr7:136554800-136555400	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
45	chr7:136554800-136555400	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr7:136554800-136555600	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:136554800-136555600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
48	chr7:136554800-136555600	Flanking Bivalent TSS/Enh	Osteobl	bone
49	chr7:136554800-136555800	Bivalent Enhancer	Psoas Muscle	Psoas
50	chr7:136554800-136556200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel

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