Variant report

Variant	rs639666
Chromosome Location	chr1:84476650-84476651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84463231..84465274-chr1:84476480..84478327,2	K562	blood:

Variant related genes	Relation type
ENSG00000137941	Chromatin interaction

rs_ID	r²[population]
rs10127737	0.86[JPT][hapmap]
rs10493741	0.86[JPT][hapmap]
rs10493744	0.85[JPT][hapmap]
rs10874424	0.85[JPT][hapmap]
rs11163861	0.86[JPT][hapmap]
rs11163862	0.85[JPT][hapmap]
rs11163865	0.86[JPT][hapmap]
rs11163866	0.86[JPT][hapmap]
rs11163867	0.85[JPT][hapmap]
rs11163868	0.81[JPT][hapmap]
rs11163874	0.89[JPT][hapmap]
rs11163875	0.86[JPT][hapmap]
rs11163877	0.84[JPT][hapmap]
rs11163878	0.90[JPT][hapmap]
rs12070578	0.85[JPT][hapmap]
rs12118434	0.85[JPT][hapmap]
rs12121175	0.86[JPT][hapmap]
rs12135028	0.86[JPT][hapmap]
rs12139191	0.85[JPT][hapmap]
rs12141272	0.86[JPT][hapmap]
rs12145258	0.85[JPT][hapmap]
rs12146038	0.85[JPT][hapmap]
rs12403631	0.86[JPT][hapmap]
rs12407641	0.86[JPT][hapmap]
rs12410617	0.86[JPT][hapmap]
rs12723239	0.86[JPT][hapmap]
rs12730621	0.86[JPT][hapmap]
rs12748268	0.85[JPT][hapmap]
rs12749350	0.85[JPT][hapmap]
rs12759527	0.80[JPT][hapmap]
rs1324484	0.89[JPT][hapmap]
rs1324486	0.85[JPT][hapmap]
rs1359331	0.86[JPT][hapmap]
rs1475263	0.86[JPT][hapmap]
rs1536166	0.85[JPT][hapmap]
rs1570691	0.85[JPT][hapmap]
rs17099118	0.85[JPT][hapmap]
rs1871924	0.86[JPT][hapmap]
rs1952065	0.85[JPT][hapmap]
rs1952066	0.86[JPT][hapmap]
rs2024591	0.85[JPT][hapmap]
rs2147950	0.85[JPT][hapmap]
rs2389617	0.89[JPT][hapmap]
rs2477201	0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes]
rs4258241	0.85[JPT][hapmap]
rs4907186	0.86[JPT][hapmap]
rs4907191	0.85[JPT][hapmap]
rs558567	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs575633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs587007	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs598531	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs657134	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs663136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6658559	0.85[JPT][hapmap]
rs6692233	0.85[JPT][hapmap]
rs6694752	0.85[JPT][hapmap]
rs6699501	0.84[JPT][hapmap]
rs670284	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6703382	0.86[JPT][hapmap]
rs6703493	0.89[JPT][hapmap]
rs685472	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs686839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7550413	0.84[JPT][hapmap]
rs7551787	0.85[JPT][hapmap]
rs882897	0.81[JPT][hapmap]
rs942848	0.86[JPT][hapmap]
rs980417	0.86[JPT][hapmap]

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84474000-84484000	Weak transcription	Esophagus	oesophagus
2	chr1:84474600-84477600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:84475000-84477000	Weak transcription	HMEC	breast
4	chr1:84475000-84477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:84475200-84477200	Weak transcription	NHEK	skin
6	chr1:84475400-84477000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:84475400-84477200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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