The 2.0 version of rSNPBase

Variant report

Variant rs12135028
Chromosome Location chr1:84383491-84383492
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84345600-84384400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:84351000-84391400 Weak transcription Fetal Stomach stomach
3 chr1:84360600-84384600 Weak transcription Aorta Aorta
4 chr1:84362600-84403200 Weak transcription Fetal Brain Male brain
5 chr1:84366200-84384600 Weak transcription Gastric stomach
6 chr1:84366400-84392800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:84366800-84399400 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr1:84367800-84385000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr1:84368000-84390000 Weak transcription NH-A brain
10 chr1:84368000-84394200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:84368200-84384400 Weak transcription HMEC breast
12 chr1:84368200-84393400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:84368200-84393800 Weak transcription Rectal Smooth Muscle rectum
14 chr1:84368200-84394800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:84368400-84416600 Weak transcription NHLF lung
16 chr1:84368400-84428400 Weak transcription Pancreas Pancrea
17 chr1:84374200-84393000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:84376200-84392800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:84376800-84405000 Weak transcription Left Ventricle heart
20 chr1:84378600-84390200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:84379200-84386000 Weak transcription Colon Smooth Muscle Colon
22 chr1:84380800-84387800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:84380800-84392200 Weak transcription NHEK skin
24 chr1:84381000-84393400 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:84381000-84394800 Weak transcription Muscle Satellite Cultured Cells --
26 chr1:84381000-84397400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr1:84381200-84384400 Weak transcription Pancreatic Islets Pancreatic Islet
28 chr1:84381200-84386600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:84381200-84390000 Weak transcription Psoas Muscle Psoas
30 chr1:84382000-84387000 Strong transcription Brain Germinal Matrix brain
31 chr1:84382200-84384000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:84382200-84385200 Strong transcription Fetal Muscle Trunk muscle
33 chr1:84382200-84387200 Strong transcription Fetal Brain Female brain
34 chr1:84382400-84385000 Strong transcription Brain Cingulate Gyrus brain
35 chr1:84382400-84385000 Strong transcription Skeletal Muscle Female skeletal muscle
36 chr1:84382400-84386200 Strong transcription Brain Inferior Temporal Lobe brain
37 chr1:84382400-84387000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr1:84382600-84385600 Weak transcription iPS-18 Cell Line embryonic stem cell
39 chr1:84382600-84409800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:84382800-84383600 Strong transcription Brain Hippocampus Middle brain
41 chr1:84382800-84384600 Weak transcription HSMMtube muscle
42 chr1:84383000-84384400 Enhancers K562 blood
43 chr1:84383200-84384200 Weak transcription Fetal Muscle Leg muscle
44 chr1:84383200-84384400 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr1:84383200-84384400 Weak transcription Stomach Smooth Muscle stomach
46 chr1:84383200-84384600 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:84383200-84386000 Weak transcription Brain Anterior Caudate brain
48 chr1:84383200-84386000 Weak transcription Brain Substantia Nigra brain
49 chr1:84383200-84386000 Weak transcription NHDF-Ad bronchial
50 chr1:84383200-84393000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015