Variant report

Variant	rs6667468
Chromosome Location	chr1:84479507-84479508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84460505..84462859-chr1:84477477..84479738,2	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10127737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10465746	0.91[ASN][1000 genomes]
rs10493741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10493744	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10874423	0.87[ASN][1000 genomes]
rs10874424	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11163861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs11163862	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11163865	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11163866	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11163867	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11163868	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.93[ASN][1000 genomes]
rs11163872	0.82[ASN][1000 genomes]
rs11163874	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs11163875	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs11163876	0.92[ASN][1000 genomes]
rs11163877	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11163878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[ASN][1000 genomes]
rs11163879	0.96[ASN][1000 genomes]
rs11163884	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11163885	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11163886	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11163887	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11807807	0.92[ASN][1000 genomes]
rs12070578	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12118434	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs12119275	0.85[CEU][hapmap];0.87[CHB][hapmap]
rs12121175	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12127266	0.86[ASN][1000 genomes]
rs12133778	0.86[ASN][1000 genomes]
rs12135028	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12139191	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12140068	0.91[ASN][1000 genomes]
rs12141272	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12145258	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12145516	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12146038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes]
rs12184292	0.82[ASN][1000 genomes]
rs12401314	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12402130	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12403631	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12406984	0.93[YRI][hapmap];0.90[ASN][1000 genomes]
rs12407641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs12410398	0.95[ASN][1000 genomes]
rs12410617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[ASN][1000 genomes]
rs12723239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12730621	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12732697	0.81[ASN][1000 genomes]
rs12738214	0.82[ASN][1000 genomes]
rs12748268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[ASN][1000 genomes]
rs12749350	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12757632	0.82[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs12758441	0.81[ASN][1000 genomes]
rs12759527	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs1324484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1324486	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1359331	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1475263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1536165	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1536166	0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1570690	0.89[ASN][1000 genomes]
rs1570691	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17099118	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17475760	0.93[ASN][1000 genomes]
rs17534614	0.90[ASN][1000 genomes]
rs1871924	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1871925	0.97[ASN][1000 genomes]
rs1886769	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1886770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925710	0.93[ASN][1000 genomes]
rs1952065	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1952066	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2024591	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2147392	0.88[ASN][1000 genomes]
rs2147950	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2224990	0.96[ASN][1000 genomes]
rs2389616	0.95[ASN][1000 genomes]
rs2389617	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2389647	0.90[ASN][1000 genomes]
rs2389648	0.89[ASN][1000 genomes]
rs2389649	0.88[ASN][1000 genomes]
rs2477201	0.85[JPT][hapmap]
rs28445286	0.95[ASN][1000 genomes]
rs28567085	0.96[ASN][1000 genomes]
rs34155960	0.92[ASN][1000 genomes]
rs34274953	0.85[ASN][1000 genomes]
rs34636124	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35485748	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35946036	0.96[ASN][1000 genomes]
rs35969331	0.96[ASN][1000 genomes]
rs4258241	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4907186	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4907188	0.81[ASN][1000 genomes]
rs4907189	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[ASN][1000 genomes]
rs4907190	0.92[ASN][1000 genomes]
rs4907191	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[ASN][1000 genomes]
rs558567	0.85[JPT][hapmap]
rs575633	0.85[JPT][hapmap]
rs598531	0.86[JPT][hapmap]
rs639666	0.86[JPT][hapmap]
rs663136	0.85[JPT][hapmap]
rs6658559	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6670658	0.96[ASN][1000 genomes]
rs6685344	0.85[ASN][1000 genomes]
rs6687372	0.96[ASN][1000 genomes]
rs6692233	0.82[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6694752	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6699501	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs670284	0.85[JPT][hapmap]
rs6703382	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs6703493	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs685472	0.85[JPT][hapmap]
rs686839	0.85[JPT][hapmap]
rs7531537	0.95[ASN][1000 genomes]
rs7550413	0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7551787	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs882897	0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs936661	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942848	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs942849	0.96[ASN][1000 genomes]
rs9660265	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs980417	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs980418	0.85[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84474000-84484000	Weak transcription	Esophagus	oesophagus
2	chr1:84478800-84480600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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