The 2.0 version of rSNPBase

Variant report

Variant rs2389616
Chromosome Location chr1:84465999-84466000
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:25 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84462000-84466000 Active TSS Brain Hippocampus Middle brain
2 chr1:84462000-84467000 Active TSS Brain Angular Gyrus brain
3 chr1:84463600-84466400 Active TSS Stomach Smooth Muscle stomach
4 chr1:84464600-84466000 Active TSS Brain Germinal Matrix brain
5 chr1:84465200-84466000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:84465400-84466000 Flanking Active TSS Fetal Brain Female brain
7 chr1:84465600-84466000 Bivalent Enhancer Primary hematopoietic stem cells blood
8 chr1:84465600-84466200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:84465600-84466400 Enhancers Skeletal Muscle Male skeletal muscle
10 chr1:84465600-84467200 Flanking Active TSS Brain Anterior Caudate brain
11 chr1:84465600-84467200 Bivalent Enhancer Fetal Muscle Leg muscle
12 chr1:84465800-84466000 Active TSS Brain Inferior Temporal Lobe brain
13 chr1:84465800-84466000 Enhancers NHLF lung
14 chr1:84465800-84466200 Enhancers Brain Cingulate Gyrus brain
15 chr1:84465800-84466200 Flanking Active TSS Brain Substantia Nigra brain
16 chr1:84465800-84466400 Enhancers NHDF-Ad bronchial
17 chr1:84465800-84466600 Weak transcription Aorta Aorta
18 chr1:84465800-84466600 Enhancers Fetal Brain Male brain
19 chr1:84465800-84466800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:84465800-84466800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
21 chr1:84465800-84466800 Weak transcription Rectal Smooth Muscle rectum
22 chr1:84465800-84467800 Weak transcription HUVEC blood vessel
23 chr1:84465800-84467800 Weak transcription NHEK skin
24 chr1:84465800-84468000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:84465800-84468200 Weak transcription HMEC breast

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Last update: Aug 31, 2015