The 2.0 version of rSNPBase

Variant report

Variant rs28726372
Chromosome Location chr1:84353839-84353840
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:84327000-84361800 Weak transcription Fetal Brain Female brain
2 chr1:84327000-84375400 Weak transcription Brain Germinal Matrix brain
3 chr1:84328200-84354400 Weak transcription Brain Substantia Nigra brain
4 chr1:84329000-84373000 Weak transcription Brain Cingulate Gyrus brain
5 chr1:84333400-84382400 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr1:84334600-84355400 Weak transcription HSMMtube muscle
7 chr1:84338800-84367600 Weak transcription Pancreas Pancrea
8 chr1:84341000-84359400 Weak transcription Psoas Muscle Psoas
9 chr1:84341200-84380400 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr1:84343600-84361800 Weak transcription Fetal Brain Male brain
11 chr1:84345600-84384400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:84346800-84382400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
13 chr1:84349200-84355200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr1:84349800-84355400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr1:84349800-84365000 Weak transcription Stomach Smooth Muscle stomach
16 chr1:84349800-84365800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:84349800-84380400 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr1:84350000-84366000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:84350000-84366000 Weak transcription NHDF-Ad bronchial
20 chr1:84350200-84355200 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr1:84350200-84363000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:84350200-84363000 Weak transcription NHEK skin
23 chr1:84351000-84391400 Weak transcription Fetal Stomach stomach
24 chr1:84351800-84355400 Weak transcription Adipose Nuclei Adipose
25 chr1:84352000-84355400 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr1:84352400-84354000 Strong transcription Fetal Muscle Leg muscle
27 chr1:84352600-84355800 Strong transcription Fetal Muscle Trunk muscle
28 chr1:84352800-84359400 Weak transcription Aorta Aorta
29 chr1:84352800-84382400 Weak transcription Brain Anterior Caudate brain
30 chr1:84353000-84356000 Weak transcription HSMM muscle
31 chr1:84353000-84365600 Weak transcription HMEC breast
32 chr1:84353200-84354800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:84353400-84361800 Weak transcription Brain Inferior Temporal Lobe brain
34 chr1:84353400-84375400 Weak transcription Brain Angular Gyrus brain
35 chr1:84353800-84354400 Enhancers Brain Hippocampus Middle brain

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Last update: Aug 31, 2015