Variant report

Variant	rs17099118
Chromosome Location	chr1:84477312-84477313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84463231..84465274-chr1:84476480..84478327,2	K562	blood:

Variant related genes	Relation type
ENSG00000137941	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10127737	0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10465746	0.91[ASN][1000 genomes]
rs10493741	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10493744	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10874423	0.87[ASN][1000 genomes]
rs10874424	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11163861	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11163862	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11163865	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11163866	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11163867	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11163868	0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11163872	0.82[ASN][1000 genomes]
rs11163874	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11163875	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11163876	0.92[ASN][1000 genomes]
rs11163877	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11163878	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11163879	0.96[ASN][1000 genomes]
rs11163884	0.97[ASN][1000 genomes]
rs11163885	0.97[ASN][1000 genomes]
rs11163886	0.97[ASN][1000 genomes]
rs11163887	0.97[ASN][1000 genomes]
rs11807807	0.92[ASN][1000 genomes]
rs12070578	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12118434	0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12119275	0.87[CHB][hapmap];0.82[CHD][hapmap]
rs12121175	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12127266	0.86[ASN][1000 genomes]
rs12133778	0.86[ASN][1000 genomes]
rs12135028	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12139191	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12140068	0.91[ASN][1000 genomes]
rs12141272	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12145258	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12145516	0.96[ASN][1000 genomes]
rs12146038	0.87[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12184292	0.82[ASN][1000 genomes]
rs12401314	0.97[ASN][1000 genomes]
rs12402130	0.96[ASN][1000 genomes]
rs12403631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12406984	0.90[ASN][1000 genomes]
rs12407641	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12410398	0.98[ASN][1000 genomes]
rs12410617	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12723239	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12724598	0.85[TSI][hapmap]
rs12730621	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12732697	0.81[ASN][1000 genomes]
rs12738214	0.82[ASN][1000 genomes]
rs12748268	0.87[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12749350	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12757632	0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs12758441	0.81[ASN][1000 genomes]
rs12759527	0.87[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs1324484	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1324486	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1359331	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1475263	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1536165	0.89[ASN][1000 genomes]
rs1536166	1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[ASN][1000 genomes]
rs1570690	0.89[ASN][1000 genomes]
rs1570691	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17475760	0.93[ASN][1000 genomes]
rs17534614	0.89[ASN][1000 genomes]
rs1871924	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1871925	0.96[ASN][1000 genomes]
rs1886769	0.96[ASN][1000 genomes]
rs1886770	0.97[ASN][1000 genomes]
rs1925710	0.93[ASN][1000 genomes]
rs1952065	0.82[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1952066	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2024591	0.82[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs2147392	0.88[ASN][1000 genomes]
rs2147950	0.82[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2224990	0.96[ASN][1000 genomes]
rs2389616	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2389617	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2389647	0.89[ASN][1000 genomes]
rs2389648	0.89[ASN][1000 genomes]
rs2389649	0.88[ASN][1000 genomes]
rs2477201	0.85[JPT][hapmap]
rs28445286	0.95[ASN][1000 genomes]
rs28567085	0.96[ASN][1000 genomes]
rs28726372	0.81[ASN][1000 genomes]
rs34155960	0.92[ASN][1000 genomes]
rs34274953	0.85[ASN][1000 genomes]
rs34636124	0.95[ASN][1000 genomes]
rs35485748	0.97[ASN][1000 genomes]
rs35946036	0.96[ASN][1000 genomes]
rs35969331	0.96[ASN][1000 genomes]
rs3861699	0.91[TSI][hapmap]
rs4258241	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4907186	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4907188	0.81[ASN][1000 genomes]
rs4907189	0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4907190	0.92[ASN][1000 genomes]
rs4907191	0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs558567	0.85[JPT][hapmap]
rs575633	0.85[JPT][hapmap]
rs598531	0.85[JPT][hapmap]
rs639666	0.85[JPT][hapmap]
rs663136	0.85[JPT][hapmap]
rs6658559	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6667468	0.96[ASN][1000 genomes]
rs6670658	0.96[ASN][1000 genomes]
rs6685344	0.84[ASN][1000 genomes]
rs6687372	0.96[ASN][1000 genomes]
rs6692233	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs6694752	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6699501	0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs670284	0.85[JPT][hapmap]
rs6703382	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6703493	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs685472	0.85[JPT][hapmap]
rs686839	0.85[JPT][hapmap]
rs7531537	0.95[ASN][1000 genomes]
rs7550413	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7551787	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs882897	0.82[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs936661	0.90[ASN][1000 genomes]
rs942848	0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs942849	0.96[ASN][1000 genomes]
rs9660265	0.97[ASN][1000 genomes]
rs980417	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs980418	0.85[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84474000-84484000	Weak transcription	Esophagus	oesophagus
2	chr1:84474600-84477600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:84475000-84477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:84477000-84478600	Enhancers	HMEC	breast
5	chr1:84477000-84479000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:84477200-84478600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:84477200-84478800	Enhancers	NHEK	skin

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