Variant report

Variant	rs11163861
Chromosome Location	chr1:84354282-84354283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84352769..84355478-chr1:84358900..84361737,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10127737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10465746	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10493741	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10493744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10874423	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10874424	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11163862	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11163865	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163866	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11163867	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11163868	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11163874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11163875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11163876	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11163877	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11163878	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11163879	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11163884	0.82[ASN][1000 genomes]
rs11163885	0.82[ASN][1000 genomes]
rs11163886	0.82[ASN][1000 genomes]
rs11163887	0.82[ASN][1000 genomes]
rs11576870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11580836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11807807	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12070578	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12118434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12119275	0.87[CHB][hapmap]
rs12120160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12121175	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12127266	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12133778	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12135028	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12139191	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12140068	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12141272	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12145258	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12145516	0.81[ASN][1000 genomes]
rs12146038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12184292	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12401314	0.82[ASN][1000 genomes]
rs12402130	0.81[ASN][1000 genomes]
rs12403631	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12406984	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12407641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12410398	0.83[ASN][1000 genomes]
rs12410617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12723239	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12730621	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12732697	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738214	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12748268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12749350	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12757632	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12758441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12759527	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1324484	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1324486	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1359331	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1475263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1536166	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1570690	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1570691	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17099118	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17475760	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17534614	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1871924	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1871925	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1886769	0.83[ASN][1000 genomes]
rs1886770	0.84[ASN][1000 genomes]
rs1925710	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1952065	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1952066	0.89[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2024591	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2147392	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2147950	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2224990	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389616	0.83[ASN][1000 genomes]
rs2389617	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2389647	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2389648	0.83[ASN][1000 genomes]
rs2389649	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2477201	0.85[JPT][hapmap]
rs28445286	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28567085	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28726372	0.98[ASN][1000 genomes]
rs34155960	0.84[ASN][1000 genomes]
rs35485748	0.84[ASN][1000 genomes]
rs35946036	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35969331	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4258241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4907185	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4907186	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4907188	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4907189	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4907190	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4907191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5028806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs558567	0.85[JPT][hapmap]
rs575633	0.85[JPT][hapmap]
rs598531	0.86[JPT][hapmap]
rs639666	0.86[JPT][hapmap]
rs6576956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs663136	0.85[JPT][hapmap]
rs6658559	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6667468	0.81[ASN][1000 genomes]
rs6670658	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6685344	0.81[ASN][1000 genomes]
rs6687372	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6692233	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6694752	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6699501	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs670284	0.85[JPT][hapmap]
rs6703382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6703493	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs685472	0.85[JPT][hapmap]
rs686839	0.85[JPT][hapmap]
rs7529293	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7531537	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7550413	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7551787	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs882897	0.89[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs942848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs942849	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9660265	0.84[ASN][1000 genomes]
rs9700285	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs980417	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs980418	0.94[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84327000-84361800	Weak transcription	Fetal Brain Female	brain
2	chr1:84327000-84375400	Weak transcription	Brain Germinal Matrix	brain
3	chr1:84328200-84354400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:84329000-84373000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:84333400-84382400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:84334600-84355400	Weak transcription	HSMMtube	muscle
7	chr1:84338800-84367600	Weak transcription	Pancreas	Pancrea
8	chr1:84341000-84359400	Weak transcription	Psoas Muscle	Psoas
9	chr1:84341200-84380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:84343600-84361800	Weak transcription	Fetal Brain Male	brain
11	chr1:84345600-84384400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:84346800-84382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:84349200-84355200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:84349800-84355400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:84349800-84365000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:84349800-84365800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:84349800-84380400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:84350000-84366000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:84350000-84366000	Weak transcription	NHDF-Ad	bronchial
20	chr1:84350200-84355200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:84350200-84363000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:84350200-84363000	Weak transcription	NHEK	skin
23	chr1:84351000-84391400	Weak transcription	Fetal Stomach	stomach
24	chr1:84351800-84355400	Weak transcription	Adipose Nuclei	Adipose
25	chr1:84352000-84355400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr1:84352600-84355800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr1:84352800-84359400	Weak transcription	Aorta	Aorta
28	chr1:84352800-84382400	Weak transcription	Brain Anterior Caudate	brain
29	chr1:84353000-84356000	Weak transcription	HSMM	muscle
30	chr1:84353000-84365600	Weak transcription	HMEC	breast
31	chr1:84353200-84354800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:84353400-84361800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr1:84353400-84375400	Weak transcription	Brain Angular Gyrus	brain
34	chr1:84353800-84354400	Enhancers	Brain Hippocampus Middle	brain
35	chr1:84354000-84380600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links