Variant report

Variant	rs1536165
Chromosome Location	chr1:84465073-84465074
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:158)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:158 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr1:84465040-84465302	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr1:84464534-84465486	PANC-1	pancreas:	n/a	n/a
3	MYC	chr1:84464865-84465321	MCF10A-Er-Src	breast:	n/a	chr1:84464872-84464882
4	TCF7L2	chr1:84465036-84465236	MCF-7	breast:	n/a	n/a
5	SP1	chr1:84464633-84465335	A549	lung:	n/a	chr1:84465067-84465076
6	HMGN3	chr1:84464408-84465245	K562	blood:	n/a	n/a
7	REST	chr1:84463776-84465932	H1-neurons	neurons:	n/a	chr1:84464459-84464479 chr1:84465417-84465426
8	EP300	chr1:84464575-84465324	H1-hESC	embryonic stem cell:	n/a	chr1:84464866-84464882
9	MAX	chr1:84464006-84465328	H1-hESC	embryonic stem cell:	n/a	chr1:84464108-84464117 chr1:84464872-84464882
10	POLR2A	chr1:84464994-84465360	GM12891	blood:	n/a	n/a
11	MAX	chr1:84464005-84465332	K562	blood:	n/a	chr1:84464108-84464117 chr1:84464872-84464882
12	GATA3	chr1:84464602-84465410	A549	lung:	n/a	n/a
13	TAF1	chr1:84464468-84465274	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr1:84464542-84465321	ECC-1	luminal epithelium:	n/a	n/a
15	JUND	chr1:84464609-84465265	A549	lung:	n/a	chr1:84465068-84465077
16	E2F6	chr1:84463858-84465410	H1-hESC	embryonic stem cell:	n/a	chr1:84464315-84464324
17	E2F6	chr1:84464006-84465332	K562	blood:	n/a	chr1:84464315-84464324
18	POLR2A	chr1:84464682-84465087	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr1:84464307-84465491	H1-hESC	embryonic stem cell:	n/a	n/a
20	YY1	chr1:84464182-84465296	H1-hESC	embryonic stem cell:	n/a	chr1:84465148-84465157 chr1:84464382-84464391 chr1:84464583-84464602
21	SIX5	chr1:84464732-84465243	A549	lung:	n/a	n/a
22	CCNT2	chr1:84464659-84465225	K562	blood:	n/a	n/a
23	BHLHE40	chr1:84464677-84465244	HepG2	liver:	n/a	n/a
24	JUND	chr1:84464731-84465241	H1-hESC	embryonic stem cell:	n/a	chr1:84465068-84465077
25	BHLHE40	chr1:84464733-84465164	GM12878	blood:	n/a	n/a
26	POLR2A	chr1:84464640-84465419	HCT-116	colon:	n/a	n/a
27	MYC	chr1:84464702-84465381	K562	blood:	n/a	chr1:84464872-84464882
28	RUNX3	chr1:84464639-84465249	GM12878	blood:	n/a	n/a
29	MAX	chr1:84464530-84465379	A549	lung:	n/a	chr1:84464872-84464882
30	EP300	chr1:84464748-84465228	GM12878	blood:	n/a	chr1:84464866-84464882
31	TCF7L2	chr1:84464839-84465136	HEK293	kidney:	n/a	chr1:84464931-84464941
32	E2F4	chr1:84464781-84465336	MCF10A-Er-Src	breast:	n/a	n/a
33	POLR2A	chr1:84464624-84465304	H1-hESC	embryonic stem cell:	n/a	n/a
34	POLR2A	chr1:84464552-84465478	PANC-1	pancreas:	n/a	n/a
35	KAP1	chr1:84464715-84465322	HEK293	kidney:	n/a	n/a
36	RCOR1	chr1:84465041-84465219	Hela-S3	cervix:	n/a	n/a
37	TAF1	chr1:84465008-84465324	SK-N-SH	brain:	n/a	n/a
38	E2F4	chr1:84464499-84465305	K562	blood:	n/a	n/a
39	ZNF263	chr1:84464099-84465336	HEK293-T-REx	kidney:	n/a	n/a
40	CTCF	chr1:84465018-84465264	H1-hESC	embryonic stem cell:	n/a	n/a
41	TCF12	chr1:84464527-84465394	ECC-1	luminal epithelium:	n/a	n/a
42	MYC	chr1:84464734-84465278	K562	blood:	n/a	chr1:84464872-84464882
43	SIX5	chr1:84464720-84465152	H1-hESC	embryonic stem cell:	n/a	n/a
44	POLR2A	chr1:84465038-84465305	HCT-116	colon:	n/a	n/a
45	MAX	chr1:84463950-84465432	H1-hESC	embryonic stem cell:	n/a	chr1:84464108-84464117 chr1:84464872-84464882
46	MAX	chr1:84464491-84465360	HepG2	liver:	n/a	chr1:84464872-84464882
47	JUND	chr1:84463790-84465797	SK-N-SH	brain:	n/a	chr1:84465068-84465077 chr1:84464109-84464117 chr1:84464107-84464119 chr1:84464316-84464325 chr1:84464107-84464114
48	CTCF	chr1:84465060-84465210	AG04449	skin:	n/a	n/a
49	BHLHE40	chr1:84464367-84465447	K562	blood:	n/a	n/a
50	CHD1	chr1:84464729-84465131	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:84465055-84465105	K562	blood:	n/a
2	chr1:84465055-84465105	Hepatocyte	liver:	n/a
3	chr1:84465055-84465105	GM12892	blood:	n/a
4	chr1:84465055-84465105	BJ	skin:	n/a
5	chr1:84465055-84465105	SK-N-MC	brain:	n/a
6	chr1:84465055-84465105	HL-60	blood:	n/a
7	chr1:84465055-84465105	BE2_C	brain:	n/a
8	chr1:84465055-84465105	HEK293	kidney:	embryo
9	chr1:84465055-84465105	CMK	blood:	n/a
10	chr1:84465055-84465105	ProgFib	skin:	n/a
11	chr1:84465055-84465105	PFSK-1	brain:	n/a
12	chr1:84465055-84465105	NHBE	bronchial:	n/a
13	chr1:84465055-84465105	Jurkat	blood:	n/a
14	chr1:84465055-84465105	GM06990	blood:	n/a
15	chr1:84465055-84465105	AoSMC	blood vessel:	n/a
16	chr1:84465055-84465105	MCF-7	breast:	n/a
17	chr1:84465055-84465105	HCPEpiC	choroid plexus:	n/a
18	chr1:84465055-84465105	HepG2	liver:	n/a
19	chr1:84465055-84465105	ovcar-3	ovarian:	n/a
20	chr1:84465055-84465105	U87	brain:	n/a
21	chr1:84465055-84465105	AG04449	skin:	fetal
22	chr1:84465055-84465105	AG10803	skin:	n/a
23	chr1:84465055-84465105	HNPCEpiC	eye:	n/a
24	chr1:84465055-84465105	NB4	blood:	n/a
25	chr1:84465055-84465105	SK-N-SH_RA	brain:	n/a
26	chr1:84465055-84465105	A549	lung:	n/a
27	chr1:84465055-84465105	AG04450	lung:	fetal
28	chr1:84465055-84465105	HCF	heart:	n/a
29	chr1:84465055-84465105	HEEpiC	esophagus:	n/a
30	chr1:84465055-84465105	HIPEpiC	eye:	n/a
31	chr1:84465055-84465105	HRPEpiC	eye:	n/a
32	chr1:84465055-84465105	SKMC	muscle:	n/a
33	chr1:84465055-84465105	H1-hESC	embryonic stem cell:	embryo
34	chr1:84465055-84465105	Caco-2	colon:	n/a
35	chr1:84465055-84465105	NHDF-neo	bronchial:	n/a
36	chr1:84465055-84465105	GM12891	blood:	n/a
37	chr1:84465055-84465105	HMEC	breast:	n/a
38	chr1:84465055-84465105	HRCEpiC	kidney:	n/a
39	chr1:84465055-84465105	ECC-1	luminal epithelium:	n/a
40	chr1:84465055-84465105	HPAEpiC	pulmonary alveolar:	n/a
41	chr1:84465055-84465105	T-47D	breast:	n/a
42	chr1:84465055-84465105	LNCaP	prostate:	n/a
43	chr1:84465055-84465105	GM12878	blood:	n/a
44	chr1:84465055-84465105	SAEC	small airway:	n/a
45	chr1:84465055-84465105	Hela-S3	cervix:	n/a
46	chr1:84465055-84465105	MCF10A-Er-Src	breast:	n/a
47	chr1:84465055-84465105	HUVEC	blood vessel:	n/a
48	chr1:84465055-84465105	PANC-1	pancreas:	n/a
49	chr1:84465055-84465105	SK-N-SH	brain:	n/a
50	chr1:84465055-84465105	HCT-116	colon:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:84464994..84466919-chr1:84468968..84470510,3	K562	blood:
2	chr1:84463410..84466364-chr1:84542152..84546505,5	K562	blood:
3	chr1:84464864..84467059-chr1:84542152..84543740,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTLL7-1	chr1:84464970-84465750	XLOC_000888

No data

Variant related genes	Relation type
TTLL7	TF binding region
TTLL7	CpG island
ENSG00000271576	Chromatin interaction
ENSG00000142875	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10127737	0.82[ASN][1000 genomes]
rs10465746	0.87[ASN][1000 genomes]
rs10493741	0.86[ASN][1000 genomes]
rs10493744	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10874423	0.83[ASN][1000 genomes]
rs10874424	0.87[ASN][1000 genomes]
rs11163865	0.82[ASN][1000 genomes]
rs11163866	0.82[ASN][1000 genomes]
rs11163867	0.85[ASN][1000 genomes]
rs11163868	0.89[ASN][1000 genomes]
rs11163874	0.92[ASN][1000 genomes]
rs11163875	0.92[ASN][1000 genomes]
rs11163876	0.88[ASN][1000 genomes]
rs11163877	0.91[ASN][1000 genomes]
rs11163878	0.92[ASN][1000 genomes]
rs11163879	0.93[ASN][1000 genomes]
rs11163884	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11163885	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11163886	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11163887	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11807807	0.88[ASN][1000 genomes]
rs12121175	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12127266	0.82[ASN][1000 genomes]
rs12133778	0.82[ASN][1000 genomes]
rs12135028	0.84[ASN][1000 genomes]
rs12139191	0.86[ASN][1000 genomes]
rs12140068	0.87[ASN][1000 genomes]
rs12141272	0.91[ASN][1000 genomes]
rs12145258	0.88[ASN][1000 genomes]
rs12145516	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12146038	0.87[ASN][1000 genomes]
rs12401314	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12402130	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12403631	0.89[ASN][1000 genomes]
rs12406984	0.87[ASN][1000 genomes]
rs12407641	0.82[ASN][1000 genomes]
rs12410398	0.91[ASN][1000 genomes]
rs12410617	0.85[ASN][1000 genomes]
rs12723239	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12730621	0.91[ASN][1000 genomes]
rs12748268	0.84[ASN][1000 genomes]
rs12749350	0.91[ASN][1000 genomes]
rs12757632	0.87[ASN][1000 genomes]
rs12759527	0.92[ASN][1000 genomes]
rs1324484	0.86[ASN][1000 genomes]
rs1324486	0.85[ASN][1000 genomes]
rs1359331	0.82[ASN][1000 genomes]
rs1536166	0.91[ASN][1000 genomes]
rs1570690	0.85[ASN][1000 genomes]
rs1570691	0.82[ASN][1000 genomes]
rs17099118	0.89[ASN][1000 genomes]
rs17475760	0.89[ASN][1000 genomes]
rs17534614	0.86[ASN][1000 genomes]
rs1871924	0.88[ASN][1000 genomes]
rs1871925	0.93[ASN][1000 genomes]
rs1886769	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1886770	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925710	0.89[ASN][1000 genomes]
rs1952065	0.92[ASN][1000 genomes]
rs1952066	0.91[ASN][1000 genomes]
rs2147392	0.84[ASN][1000 genomes]
rs2147950	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2224990	0.92[ASN][1000 genomes]
rs2389616	0.91[ASN][1000 genomes]
rs2389647	0.86[ASN][1000 genomes]
rs2389648	0.85[ASN][1000 genomes]
rs2389649	0.84[ASN][1000 genomes]
rs28445286	0.91[ASN][1000 genomes]
rs28567085	0.92[ASN][1000 genomes]
rs34155960	0.88[ASN][1000 genomes]
rs34274953	0.82[ASN][1000 genomes]
rs34636124	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35485748	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35946036	0.92[ASN][1000 genomes]
rs35969331	0.92[ASN][1000 genomes]
rs4258241	0.92[ASN][1000 genomes]
rs4907189	0.86[ASN][1000 genomes]
rs4907190	0.88[ASN][1000 genomes]
rs4907191	0.92[ASN][1000 genomes]
rs6658559	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6667468	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6670658	0.92[ASN][1000 genomes]
rs6685344	0.81[ASN][1000 genomes]
rs6687372	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6694752	0.86[ASN][1000 genomes]
rs6699501	0.86[ASN][1000 genomes]
rs6703382	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6703493	0.91[ASN][1000 genomes]
rs7531537	0.91[ASN][1000 genomes]
rs7550413	0.87[ASN][1000 genomes]
rs7551787	0.88[ASN][1000 genomes]
rs882897	0.91[ASN][1000 genomes]
rs936661	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs942848	0.92[ASN][1000 genomes]
rs942849	0.92[ASN][1000 genomes]
rs9660265	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs980417	0.82[ASN][1000 genomes]
rs980418	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823353	chr1:84464183-84465098	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84460000-84465600	Active TSS	Brain Anterior Caudate	brain
2	chr1:84461200-84465600	Active TSS	Brain Cingulate Gyrus	brain
3	chr1:84461800-84465600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr1:84461800-84465800	Active TSS	Aorta	Aorta
5	chr1:84461800-84465800	Active TSS	Brain Substantia Nigra	brain
6	chr1:84462000-84465600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:84462000-84466000	Active TSS	Brain Hippocampus Middle	brain
8	chr1:84462000-84467000	Active TSS	Brain Angular Gyrus	brain
9	chr1:84463000-84465800	Active TSS	NHLF	lung
10	chr1:84463400-84465600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr1:84463600-84466400	Active TSS	Stomach Smooth Muscle	stomach
12	chr1:84463800-84465400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:84463800-84465400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:84463800-84465400	Active TSS	NHEK	skin
15	chr1:84463800-84465600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr1:84463800-84465600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
17	chr1:84463800-84465600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:84463800-84465600	Active TSS	Right Atrium	heart
19	chr1:84463800-84465600	Active TSS	Right Ventricle	heart
20	chr1:84463800-84465800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
21	chr1:84463800-84465800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr1:84464000-84465200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:84464000-84465200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:84464000-84465200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
25	chr1:84464000-84465200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
26	chr1:84464000-84465200	Active TSS	Gastric	stomach
27	chr1:84464000-84465200	Active TSS	Lung	lung
28	chr1:84464000-84465200	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
29	chr1:84464000-84465200	Active TSS	NH-A	brain
30	chr1:84464000-84465200	Active TSS	Osteobl	bone
31	chr1:84464000-84465400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:84464000-84465400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:84464000-84465400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr1:84464000-84465400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:84464000-84465400	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr1:84464000-84465400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:84464000-84465400	Active TSS	Fetal Brain Female	brain
38	chr1:84464000-84465400	Active TSS	Left Ventricle	heart
39	chr1:84464000-84465400	Active TSS	Psoas Muscle	Psoas
40	chr1:84464000-84465400	Active TSS	Rectal Smooth Muscle	rectum
41	chr1:84464000-84465400	Active TSS	A549	lung
42	chr1:84464000-84465400	Active TSS	HSMMtube	muscle
43	chr1:84464000-84465600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr1:84464000-84465600	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:84464000-84465600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:84464000-84465600	Active TSS	Hela-S3	cervix
47	chr1:84464000-84465600	Active TSS	K562	blood
48	chr1:84464200-84465200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:84464200-84465200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:84464200-84465200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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