Variant report

Variant	rs6447508
Chromosome Location	chr4:46361545-46361546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10010493	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs10212704	0.85[EUR][1000 genomes]
rs10805145	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12647055	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs12648978	0.88[EUR][1000 genomes]
rs13119741	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs172156	0.92[ASN][1000 genomes]
rs175929	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs175930	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs175931	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs1808851	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1837496	0.89[EUR][1000 genomes]
rs183960	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs183961	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183962	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs189957	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs190715	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs203656	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs2083422	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2083423	0.88[EUR][1000 genomes]
rs2196881	0.88[EUR][1000 genomes]
rs2196882	0.89[EUR][1000 genomes]
rs2218164	0.88[EUR][1000 genomes]
rs2350770	0.88[EUR][1000 genomes]
rs2350771	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs2350772	0.86[EUR][1000 genomes]
rs2350773	0.89[EUR][1000 genomes]
rs2350774	0.81[EUR][1000 genomes]
rs279822	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs279823	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs279826	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs279828	0.93[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs279830	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs279831	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs279833	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs279834	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs279836	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs279837	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs279838	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs279839	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs279840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs279841	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs279842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs279843	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs279844	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs279845	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs279846	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs279847	0.86[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs279848	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs279851	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs279852	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs279856	0.92[CEU][hapmap];0.83[CHB][hapmap];0.89[EUR][1000 genomes]
rs279857	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs279858	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs279859	0.93[CEU][hapmap];0.84[CHB][hapmap]
rs279860	0.92[CEU][hapmap]
rs279861	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs279862	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs279863	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs279864	0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs279867	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs279868	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs279869	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs279870	0.88[EUR][1000 genomes]
rs279871	0.89[EUR][1000 genomes]
rs279872	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs279873	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs28640041	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28753386	0.88[EUR][1000 genomes]
rs28800541	0.87[EUR][1000 genomes]
rs28873227	0.89[EUR][1000 genomes]
rs35007802	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs450571	0.92[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs4540087	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs481311	0.82[CEU][hapmap]
rs482179	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs483160	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs490967	0.82[CEU][hapmap]
rs496650	0.82[CEU][hapmap]
rs502038	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs514733	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs517134	0.82[EUR][1000 genomes]
rs519270	0.82[CEU][hapmap]
rs519869	0.82[EUR][1000 genomes]
rs526752	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs526805	0.81[CEU][hapmap]
rs530329	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs532363	0.82[EUR][1000 genomes]
rs532780	0.82[CEU][hapmap]
rs534459	0.81[CEU][hapmap]
rs535890	0.84[EUR][1000 genomes]
rs537134	0.81[CEU][hapmap]
rs537787	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs540363	0.81[CEU][hapmap]
rs542432	0.81[CEU][hapmap]
rs543351	0.82[CEU][hapmap]
rs543809	0.81[CEU][hapmap]
rs548260	0.82[CEU][hapmap]
rs548583	0.81[CEU][hapmap]
rs548956	0.82[EUR][1000 genomes]
rs551905	0.82[EUR][1000 genomes]
rs558111	0.81[EUR][1000 genomes]
rs568144	0.81[EUR][1000 genomes]
rs572227	0.81[CEU][hapmap]
rs573400	0.81[CEU][hapmap]
rs575048	0.85[EUR][1000 genomes]
rs57698652	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs577544	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs6447507	0.88[EUR][1000 genomes]
rs6833452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6858870	0.89[EUR][1000 genomes]
rs693547	0.82[CEU][hapmap]
rs7669378	0.89[EUR][1000 genomes]
rs7699453	0.89[EUR][1000 genomes]
rs9291282	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs9997059	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007038	chr4:46343910-46413230	Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46356400-46386000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:46357800-46365200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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