Variant report

Variant	rs572227
Chromosome Location	chr4:46251393-46251394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10010493	0.89[CEU][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10212704	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10805145	0.83[MEX][hapmap]
rs12648978	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13119741	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs175931	0.89[CEU][hapmap]
rs1808851	0.89[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1837496	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs183962	0.86[YRI][hapmap]
rs203656	0.89[CEU][hapmap];0.84[GIH][hapmap];0.87[TSI][hapmap]
rs2083422	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2083423	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2196881	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2196882	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2218164	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2350767	0.81[AMR][1000 genomes]
rs2350770	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2350771	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs2350772	0.84[AMR][1000 genomes]
rs2350773	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2350774	0.82[AMR][1000 genomes]
rs279826	0.83[MEX][hapmap]
rs279836	0.81[CEU][hapmap]
rs279837	0.81[CEU][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap]
rs279838	0.81[CEU][hapmap]
rs279839	0.81[CEU][hapmap]
rs279840	0.81[CEU][hapmap]
rs279841	0.87[MEX][hapmap];0.81[TSI][hapmap]
rs279842	0.81[CEU][hapmap];0.90[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap]
rs279843	0.81[CEU][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs279845	0.87[MEX][hapmap]
rs279846	0.83[MEX][hapmap]
rs279847	0.80[AMR][1000 genomes]
rs279848	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279851	0.89[CEU][hapmap];0.85[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs279852	0.89[CEU][hapmap];0.82[YRI][hapmap]
rs279856	0.89[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279857	0.89[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap]
rs279858	0.93[ASW][hapmap];0.89[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.88[YRI][hapmap]
rs279859	0.89[CEU][hapmap]
rs279860	0.88[CEU][hapmap]
rs279861	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs279862	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs279863	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs279864	0.89[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279867	0.89[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs279868	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279869	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279870	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279871	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279872	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279873	0.89[CEU][hapmap];0.85[GIH][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28640041	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28753386	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28800541	0.95[AMR][1000 genomes]
rs28873227	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35007802	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs450571	0.89[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs472062	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs474773	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475713	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs481311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs482179	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs483160	0.89[CEU][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs490967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs493459	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs496650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs497068	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501059	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs502038	0.81[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs505474	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs514465	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs514733	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs517134	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs519270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs519869	0.96[CEU][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs526752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs526805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs530329	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs532363	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs532780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs534459	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap]
rs535890	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs537134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs537787	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs540363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap]
rs542432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543809	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.88[TSI][hapmap];0.94[YRI][hapmap]
rs548260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap]
rs548583	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs548956	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs551905	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs554112	0.93[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.94[YRI][hapmap]
rs558111	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs568144	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs573400	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs575048	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs577544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6447507	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6447508	0.81[CEU][hapmap]
rs6833452	0.81[CEU][hapmap]
rs6858870	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs693547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7669378	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7699453	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9291282	0.89[CEU][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9997059	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs572227	GABRG1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46250200-46251600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr4:46251200-46251800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:46251200-46251800	Enhancers	Brain Germinal Matrix	brain

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