Variant report

Variant	rs501059
Chromosome Location	chr4:46221850-46221851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10010493	0.89[AMR][1000 genomes]
rs10212704	0.89[AMR][1000 genomes]
rs13119741	0.90[AMR][1000 genomes]
rs1808851	0.86[AMR][1000 genomes]
rs1837496	0.88[AMR][1000 genomes]
rs2083422	0.84[AMR][1000 genomes]
rs2196882	0.89[AMR][1000 genomes]
rs2350770	0.88[AMR][1000 genomes]
rs2350773	0.89[AMR][1000 genomes]
rs279848	0.84[AMR][1000 genomes]
rs279867	0.86[AMR][1000 genomes]
rs279868	0.85[AMR][1000 genomes]
rs279871	0.84[AMR][1000 genomes]
rs28640041	0.86[AMR][1000 genomes]
rs28800541	0.87[AMR][1000 genomes]
rs28873227	0.90[AMR][1000 genomes]
rs35007802	0.86[AMR][1000 genomes]
rs472062	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs474773	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475713	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482179	0.90[AMR][1000 genomes]
rs483160	0.89[AMR][1000 genomes]
rs493459	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs497068	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs502038	0.85[AMR][1000 genomes]
rs505474	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs517134	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs519869	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs526752	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs530329	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs532363	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs532780	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs535890	0.89[AMR][1000 genomes]
rs537787	0.90[AMR][1000 genomes]
rs542432	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543351	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs548956	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs551905	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs568144	0.85[AMR][1000 genomes]
rs572227	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs575048	0.90[AMR][1000 genomes]
rs577544	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6858870	0.89[AMR][1000 genomes]
rs7669378	0.90[AMR][1000 genomes]
rs7699453	0.90[AMR][1000 genomes]
rs9291282	0.90[AMR][1000 genomes]
rs9997059	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461353	chr4:45470453-46227847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv470030	chr4:45470453-46227847	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv594109	chr4:45470453-46227847	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1809677	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1813566	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1846700	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1848010	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46221800-46222800	Enhancers	HepG2	liver

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