Variant report

Variant	rs543351
Chromosome Location	chr4:46246425-46246426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:46246159-46246585	MCF10A-Er-Src	breast:	n/a	chr4:46246376-46246383

Variant related genes	Relation type
ENSG00000260878	TF binding region

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10010493	0.89[CEU][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10212704	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12648978	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13119741	0.89[CEU][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs175931	0.90[CEU][hapmap]
rs1808851	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1837496	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs183962	0.93[YRI][hapmap]
rs203656	0.89[CEU][hapmap]
rs2083422	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2083423	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2196881	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2196882	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2218164	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2350770	0.95[AMR][1000 genomes]
rs2350771	0.90[CEU][hapmap];0.83[AMR][1000 genomes]
rs2350772	0.83[AMR][1000 genomes]
rs2350773	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2350774	0.81[AMR][1000 genomes]
rs279833	0.81[YRI][hapmap]
rs279836	0.82[CEU][hapmap]
rs279837	0.81[CEU][hapmap]
rs279838	0.82[CEU][hapmap]
rs279839	0.82[CEU][hapmap]
rs279840	0.82[CEU][hapmap]
rs279842	0.81[CEU][hapmap]
rs279843	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs279848	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs279851	0.89[CEU][hapmap]
rs279852	0.90[CEU][hapmap];0.88[YRI][hapmap]
rs279856	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279857	0.89[CEU][hapmap]
rs279858	0.89[CEU][hapmap];0.94[YRI][hapmap]
rs279859	0.90[CEU][hapmap]
rs279860	0.89[CEU][hapmap]
rs279861	0.86[CEU][hapmap];0.94[YRI][hapmap]
rs279862	0.85[CEU][hapmap];0.92[YRI][hapmap]
rs279863	0.86[CEU][hapmap];0.94[YRI][hapmap]
rs279864	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs279867	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279868	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279869	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs279870	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs279871	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs279872	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs279873	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28640041	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28753386	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28800541	0.93[AMR][1000 genomes]
rs28873227	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35007802	0.92[AMR][1000 genomes]
rs450571	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs472062	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs474773	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs475713	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs481311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs482179	0.89[CEU][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs483160	0.89[CEU][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs490967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs493459	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs496650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs497068	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs501059	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs502038	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs505474	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs514465	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs514733	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs517134	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs519270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs519869	0.96[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs526752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs526805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs530329	1.00[CEU][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs532363	0.88[CEU][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs532780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs534459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs535890	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs537134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs537787	0.90[CEU][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs540363	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs542432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs548260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs548583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs548956	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs551905	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs554112	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs558111	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs568144	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs572227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573400	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs575048	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs577544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6447507	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6447508	0.82[CEU][hapmap]
rs6833452	0.82[CEU][hapmap]
rs6858870	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs693547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7669378	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7699453	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9291282	0.90[CEU][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9997059	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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