Variant report

Variant	rs475713
Chromosome Location	chr4:46222207-46222208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10010493	0.85[CEU][hapmap]
rs12648978	0.85[AMR][1000 genomes]
rs13119741	0.82[CEU][hapmap]
rs175931	0.82[CEU][hapmap]
rs1808851	0.82[CEU][hapmap]
rs203656	0.82[CEU][hapmap]
rs2083423	0.89[AMR][1000 genomes]
rs2196881	0.89[AMR][1000 genomes]
rs2218164	0.89[AMR][1000 genomes]
rs2350771	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs2350772	0.87[AMR][1000 genomes]
rs279847	0.84[AMR][1000 genomes]
rs279851	0.82[CEU][hapmap]
rs279852	0.82[CEU][hapmap]
rs279856	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs279857	0.82[CEU][hapmap]
rs279858	0.82[CEU][hapmap]
rs279859	0.82[CEU][hapmap]
rs279860	0.81[CEU][hapmap]
rs279862	0.81[CEU][hapmap]
rs279864	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs279867	0.82[CEU][hapmap]
rs279869	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs279870	0.84[AMR][1000 genomes]
rs279872	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs279873	0.82[CEU][hapmap];0.85[AMR][1000 genomes]
rs28753386	0.85[AMR][1000 genomes]
rs450571	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs472062	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs474773	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481311	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs482179	0.85[CEU][hapmap]
rs483160	0.82[CEU][hapmap]
rs490967	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs493459	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs496650	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs497068	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs501059	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs502038	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs505474	0.88[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs514465	0.89[AMR][1000 genomes]
rs514733	0.81[CEU][hapmap];0.89[AMR][1000 genomes]
rs517134	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs519270	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs519869	0.89[CEU][hapmap]
rs526752	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs526805	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs530329	0.93[CEU][hapmap];0.80[AMR][1000 genomes]
rs532363	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs532780	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs534459	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs537134	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs537787	0.82[CEU][hapmap]
rs540363	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs542432	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543351	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs543809	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs548260	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs548583	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs548956	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs551905	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs554112	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs558111	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs568144	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs572227	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs573400	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs577544	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6447507	0.87[AMR][1000 genomes]
rs693547	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9291282	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461353	chr4:45470453-46227847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv470030	chr4:45470453-46227847	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv594109	chr4:45470453-46227847	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1809677	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1813566	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1846700	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1848010	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46221800-46222800	Enhancers	HepG2	liver

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