Variant report

Variant	rs279872
Chromosome Location	chr4:46305194-46305195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10010493	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10212704	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10805145	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs12648978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13119741	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs172156	0.81[ASN][1000 genomes]
rs175929	0.90[CEU][hapmap]
rs175930	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs175931	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1808851	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1837496	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs183960	0.86[AMR][1000 genomes]
rs183961	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs183962	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs189957	0.85[CEU][hapmap]
rs203656	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2083422	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083423	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2196881	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2196882	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2218164	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350770	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350771	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350772	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350773	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350774	0.88[EUR][1000 genomes]
rs279822	0.90[CEU][hapmap]
rs279823	0.89[CEU][hapmap]
rs279826	0.81[CEU][hapmap]
rs279828	0.86[CEU][hapmap]
rs279833	0.89[CEU][hapmap]
rs279834	0.88[CEU][hapmap]
rs279836	0.93[CEU][hapmap]
rs279837	0.92[CEU][hapmap]
rs279838	0.93[CEU][hapmap]
rs279839	0.93[CEU][hapmap]
rs279840	0.93[CEU][hapmap]
rs279841	0.89[CEU][hapmap]
rs279842	0.92[CEU][hapmap]
rs279843	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs279844	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs279845	0.81[CEU][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs279846	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs279847	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs279848	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs279851	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279852	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279856	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs279857	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279858	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279859	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs279860	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs279861	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279862	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279863	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs279864	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs279867	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279868	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279869	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279870	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs279871	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs279873	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28640041	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28753386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28800541	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28873227	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35007802	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs450571	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4540087	0.86[CEU][hapmap]
rs475713	0.85[AMR][1000 genomes]
rs481311	0.89[CEU][hapmap]
rs482179	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs483160	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs490967	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs493459	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs496650	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs497068	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs502038	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs505474	0.85[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs514465	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs514733	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs517134	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs519270	0.90[CEU][hapmap]
rs519869	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs526752	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs526805	0.89[CEU][hapmap]
rs530329	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs532363	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs532780	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs534459	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs535890	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs537134	0.89[CEU][hapmap]
rs537787	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs540363	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs542432	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs543351	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs543809	0.89[CEU][hapmap]
rs548260	0.90[CEU][hapmap]
rs548583	0.89[CEU][hapmap]
rs548956	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs551905	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs554112	0.82[CEU][hapmap]
rs558111	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs568144	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs572227	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs573400	0.89[CEU][hapmap]
rs575048	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57698652	0.89[EUR][1000 genomes]
rs577544	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6447507	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6447508	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs6833452	0.93[CEU][hapmap]
rs6858870	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs693547	0.90[CEU][hapmap]
rs7669378	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7699453	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291282	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9997059	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46293000-46308600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:46299200-46307600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links