Variant report

Variant	rs28800541
Chromosome Location	chr4:46292203-46292204
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10010493	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10212704	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12648978	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13119741	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs175930	0.81[EUR][1000 genomes]
rs1808851	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1837496	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs183961	0.81[EUR][1000 genomes]
rs2083422	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2083423	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2196881	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2196882	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2218164	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350770	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2350771	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2350772	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2350773	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2350774	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs279843	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs279844	0.80[EUR][1000 genomes]
rs279846	0.81[EUR][1000 genomes]
rs279847	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs279848	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs279856	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs279864	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs279867	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs279868	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs279869	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs279870	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs279871	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs279872	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs279873	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28640041	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28753386	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28873227	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35007802	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs450571	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs474773	0.87[AMR][1000 genomes]
rs482179	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs483160	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs493459	0.96[AMR][1000 genomes]
rs497068	0.91[AMR][1000 genomes]
rs501059	0.87[AMR][1000 genomes]
rs502038	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs505474	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs514465	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs514733	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs517134	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs519869	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs526752	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs530329	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs532363	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs532780	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs535890	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs537787	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs542432	0.96[AMR][1000 genomes]
rs543351	0.93[AMR][1000 genomes]
rs548956	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs551905	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs558111	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs568144	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs572227	0.95[AMR][1000 genomes]
rs575048	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57698652	0.88[EUR][1000 genomes]
rs577544	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6447507	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6447508	0.87[EUR][1000 genomes]
rs6858870	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7669378	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7699453	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291282	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9997059	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46276000-46297600	Weak transcription	Brain Anterior Caudate	brain
2	chr4:46289600-46297400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:46291600-46297800	Weak transcription	Brain Inferior Temporal Lobe	brain

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