Variant report

Variant	rs472062
Chromosome Location	chr4:46221816-46221817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10010493	0.89[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs10212704	0.81[AMR][1000 genomes]
rs13119741	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs175929	0.82[YRI][hapmap]
rs175931	0.86[CEU][hapmap]
rs1808851	0.85[CEU][hapmap]
rs1837496	0.80[AMR][1000 genomes]
rs183962	1.00[YRI][hapmap]
rs203656	0.85[CEU][hapmap]
rs2083422	0.83[CEU][hapmap]
rs2196882	0.81[AMR][1000 genomes]
rs2350770	0.80[AMR][1000 genomes]
rs2350771	0.86[CEU][hapmap]
rs2350773	0.81[AMR][1000 genomes]
rs279833	0.87[YRI][hapmap]
rs279836	0.81[YRI][hapmap]
rs279838	0.82[YRI][hapmap]
rs279840	0.82[YRI][hapmap]
rs279841	0.81[YRI][hapmap]
rs279851	0.85[CEU][hapmap]
rs279852	0.86[CEU][hapmap];0.94[YRI][hapmap]
rs279856	0.85[CEU][hapmap]
rs279857	0.85[CEU][hapmap]
rs279858	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs279859	0.86[CEU][hapmap]
rs279860	0.85[CEU][hapmap]
rs279861	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs279862	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs279863	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs279864	0.85[CEU][hapmap]
rs279867	0.85[CEU][hapmap]
rs279869	0.86[CEU][hapmap]
rs279872	0.86[CEU][hapmap]
rs279873	0.85[CEU][hapmap]
rs28873227	0.82[AMR][1000 genomes]
rs450571	0.85[CEU][hapmap]
rs474773	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs475713	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs481311	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs482179	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs483160	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs490967	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs493459	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs496650	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs497068	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs501059	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs502038	0.96[CEU][hapmap]
rs505474	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs514733	0.85[CEU][hapmap]
rs517134	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs519270	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs519869	0.93[CEU][hapmap];0.94[YRI][hapmap];0.80[AMR][1000 genomes]
rs526752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs526805	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs530329	0.96[CEU][hapmap];0.81[AMR][1000 genomes]
rs532363	0.88[CEU][hapmap];0.81[AMR][1000 genomes]
rs532780	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs534459	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs535890	0.81[AMR][1000 genomes]
rs537134	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs537787	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs540363	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs542432	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs543351	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs543809	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap]
rs548260	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap]
rs548583	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs548956	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs551905	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs554112	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs568144	0.93[CEU][hapmap]
rs572227	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs573400	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs575048	0.82[AMR][1000 genomes]
rs577544	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6858870	0.81[AMR][1000 genomes]
rs693547	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7669378	0.82[AMR][1000 genomes]
rs7699453	0.82[AMR][1000 genomes]
rs9291282	0.86[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461353	chr4:45470453-46227847	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv470030	chr4:45470453-46227847	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv594109	chr4:45470453-46227847	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1809677	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1813566	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1846700	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1848010	chr4:46202846-46232696	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:46221800-46222800	Enhancers	HepG2	liver

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