Variant report

Variant	rs6455403
Chromosome Location	chr6:71792562-71792563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71791384..71793832-chr6:71796277..71798212,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1033608	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11759339	1.00[CHB][hapmap]
rs1342760	0.81[AMR][1000 genomes]
rs1418677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1578730	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1578731	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16869607	1.00[CHB][hapmap]
rs1891522	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1935811	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2103857	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2103858	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4707890	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4707892	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6907179	1.00[CHB][hapmap]
rs6911809	1.00[CHB][hapmap]
rs718355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs767990	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7743868	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7766695	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774025	1.00[CHB][hapmap]
rs9294885	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9346424	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9346425	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9354961	1.00[CHB][hapmap]
rs9446327	0.83[AMR][1000 genomes]
rs9455309	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71789000-71792800	Enhancers	HSMM	muscle
2	chr6:71789000-71793600	Enhancers	Fetal Lung	lung
3	chr6:71791200-71792600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:71791200-71793400	Enhancers	Fetal Muscle Leg	muscle
5	chr6:71791400-71792600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:71791400-71792600	Weak transcription	NH-A	brain
7	chr6:71791400-71792800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:71791400-71793400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:71791600-71793200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:71791800-71792600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:71791800-71792600	Active TSS	Brain Anterior Caudate	brain
12	chr6:71791800-71793000	Flanking Active TSS	NHLF	lung
13	chr6:71791800-71797600	Weak transcription	Fetal Stomach	stomach
14	chr6:71792000-71792600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:71792000-71792600	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:71792000-71793200	Enhancers	Brain Angular Gyrus	brain
17	chr6:71792200-71793000	Enhancers	Colon Smooth Muscle	Colon
18	chr6:71792200-71793000	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:71792400-71792600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:71792400-71792600	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr6:71792400-71792800	Enhancers	Adipose Nuclei	Adipose
22	chr6:71792400-71792800	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr6:71792400-71792800	Enhancers	Psoas Muscle	Psoas
24	chr6:71792400-71793000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:71792400-71793000	Enhancers	Brain Cingulate Gyrus	brain
26	chr6:71792400-71793000	Enhancers	Brain Hippocampus Middle	brain
27	chr6:71792400-71793000	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr6:71792400-71793000	Enhancers	Left Ventricle	heart
29	chr6:71792400-71793000	Enhancers	HSMMtube	muscle
30	chr6:71792400-71793000	Enhancers	NHDF-Ad	bronchial
31	chr6:71792400-71793200	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:71792400-71793200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:71792400-71793200	Enhancers	Right Atrium	heart
34	chr6:71792400-71793400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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