Variant report

Variant	rs6457791
Chromosome Location	chr6:34759954-34759955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:34759658-34760119	SK-N-SH_RA	brain:	n/a	chr6:34760080-34760094 chr6:34759904-34759913 chr6:34759905-34759916 chr6:34760013-34760027 chr6:34759904-34759918 chr6:34759907-34759916
2	RCOR1	chr6:34758984-34760222	K562	blood:	n/a	n/a
3	FOXP2	chr6:34759585-34760234	PFSK-1	brain:	n/a	n/a
4	TBP	chr6:34759150-34760920	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:34759491-34760088	A549	lung:	n/a	n/a
6	TAF1	chr6:34759170-34760732	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr6:34759267-34760434	MCF-7	breast:	n/a	n/a
8	RUNX3	chr6:34759079-34760063	GM12878	blood:	n/a	n/a
9	POLR2A	chr6:34759246-34760611	GM15510	blood:	n/a	n/a
10	GTF2B	chr6:34759175-34759962	K562	blood:	n/a	n/a
11	POLR2A	chr6:34759427-34760089	GM12891	blood:	n/a	n/a
12	GATA1	chr6:34758796-34760163	PBDE	blood:	n/a	n/a
13	MAZ	chr6:34759203-34760222	Hela-S3	cervix:	n/a	n/a
14	ETS1	chr6:34759527-34760321	K562	blood:	n/a	chr6:34759703-34759718 chr6:34759905-34759916
15	MAX	chr6:34759221-34760621	ECC-1	luminal epithelium:	n/a	n/a
16	REST	chr6:34759249-34760143	K562	blood:	n/a	chr6:34759914-34759934
17	POLR2A	chr6:34759502-34760124	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr6:34759191-34760489	GM12878	blood:	n/a	n/a
19	CHD2	chr6:34759159-34759979	K562	blood:	n/a	n/a
20	MXI1	chr6:34759201-34760181	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr6:34759053-34761311	HepG2	liver:	n/a	n/a
22	POLR2A	chr6:34759059-34761490	PBDE	blood:	n/a	n/a
23	POLR2A	chr6:34759584-34759977	H1-hESC	embryonic stem cell:	n/a	n/a
24	REST	chr6:34758874-34761182	H1-neurons	neurons:	n/a	chr6:34760702-34760716 chr6:34760702-34760722 chr6:34759914-34759934 chr6:34761136-34761154 chr6:34760381-34760394 chr6:34760289-34760302 chr6:34760704-34760714
25	TCF12	chr6:34759483-34760478	ECC-1	luminal epithelium:	n/a	chr6:34760371-34760381
26	MXI1	chr6:34759705-34760056	K562	blood:	n/a	n/a
27	POLR2A	chr6:34759133-34760057	PANC-1	pancreas:	n/a	n/a
28	POLR2A	chr6:34759101-34760278	HepG2	liver:	n/a	n/a
29	MAZ	chr6:34759168-34760808	K562	blood:	n/a	chr6:34760682-34760691
30	HEY1	chr6:34758914-34760230	HepG2	liver:	n/a	chr6:34759762-34759777 chr6:34760141-34760156 chr6:34759789-34759804
31	MAX	chr6:34758954-34760640	K562	blood:	n/a	n/a
32	REST	chr6:34759043-34760156	HL-60	blood:	n/a	chr6:34759914-34759934
33	KAP1	chr6:34759132-34760127	HEK293	kidney:	n/a	n/a
34	HEY1	chr6:34759094-34760050	HepG2	liver:	n/a	chr6:34759762-34759777 chr6:34759789-34759804
35	HEY1	chr6:34758925-34760618	K562	blood:	n/a	chr6:34759762-34759777 chr6:34760141-34760156 chr6:34759789-34759804
36	CEBPD	chr6:34759082-34760104	K562	blood:	n/a	n/a
37	MAX	chr6:34759614-34760171	H1-hESC	embryonic stem cell:	n/a	n/a
38	RAD21	chr6:34759127-34759989	SK-N-SH_RA	brain:	n/a	chr6:34759788-34759802 chr6:34759760-34759774 chr6:34759976-34759989
39	YY1	chr6:34759443-34760703	HepG2	liver:	n/a	chr6:34760503-34760514 chr6:34760080-34760094 chr6:34759904-34759913 chr6:34759905-34759916 chr6:34760013-34760027 chr6:34759904-34759918 chr6:34759907-34759916
40	ZBTB7A	chr6:34759531-34760546	K562	blood:	n/a	n/a
41	POLR2A	chr6:34759163-34760804	H1-hESC	embryonic stem cell:	n/a	n/a
42	HCFC1	chr6:34759078-34760513	K562	blood:	n/a	n/a
43	POLR2A	chr6:34758957-34760118	HepG2	liver:	n/a	n/a
44	PML	chr6:34759033-34760107	K562	blood:	n/a	n/a
45	MAX	chr6:34759137-34761223	Hela-S3	cervix:	n/a	chr6:34760682-34760691
46	YY1	chr6:34759667-34760105	SK-N-SH_RA	brain:	n/a	chr6:34760080-34760094 chr6:34759904-34759913 chr6:34759905-34759916 chr6:34760013-34760027 chr6:34759904-34759918 chr6:34759907-34759916
47	TAF1	chr6:34759206-34759987	Hela-S3	cervix:	n/a	n/a
48	CHD1	chr6:34759946-34760326	H1-hESC	embryonic stem cell:	n/a	n/a
49	RAD21	chr6:34759116-34760008	H1-hESC	embryonic stem cell:	n/a	chr6:34759788-34759802 chr6:34759760-34759774 chr6:34759976-34759989
50	RELA	chr6:34759100-34760116	GM15510	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:62599065..62599913-chr6:34759620..34760230,2	NB4	blood:
2	chr6:34759201..34762395-chr6:34788232..34791970,5	MCF-7	breast:
3	chr6:34651137..34654420-chr6:34758676..34761167,3	MCF-7	breast:
4	chr19:53606146..53606673-chr6:34759631..34760361,2	Hela-S3	cervix:
5	chr6:34759673..34761787-chr6:34787706..34790146,2	MCF-7	breast:
6	chr6:34759660..34760311-chr9:35072450..35073053,2	NB4	blood:
7	chr6:34392492..34394082-chr6:34758851..34761190,2	MCF-7	breast:
8	chr6:34758599..34760857-chr6:34787566..34790962,3	K562	blood:
9	chr6:34758735..34762506-chr6:34853024..34858695,7	MCF-7	breast:
10	chr6:34662945..34666396-chr6:34758284..34762755,7	K562	blood:
11	chr6:34663461..34666396-chr6:34758437..34761219,3	K562	blood:
12	chr6:34723587..34727193-chr6:34757798..34760917,6	K562	blood:
13	chr3:42622951..42623830-chr6:34759784..34760772,2	Hela-S3	cervix:
14	chr6:34759044..34761297-chr6:34854138..34856970,2	K562	blood:
15	chr6:34723754..34729214-chr6:34758122..34762652,9	MCF-7	breast:
16	chr6:34759204..34760846-chr6:34788555..34790886,2	K562	blood:
17	chr6:34723785..34726777-chr6:34759451..34763099,4	MCF-7	breast:
18	chr3:87039890..87040592-chr6:34759297..34760271,2	Hela-S3	cervix:

Variant related genes	Relation type
UHRF1BP1	TF binding region
ENSG00000064995	Chromatin interaction
ENSG00000256690	Chromatin interaction
ENSG00000165280	Chromatin interaction
ENSG00000265123	Chromatin interaction
ENSG00000064999	Chromatin interaction
ENSG00000170949	Chromatin interaction
ENSG00000124562	Chromatin interaction
ENSG00000196821	Chromatin interaction
ENSG00000220643	Chromatin interaction
ENSG00000162236	Chromatin interaction
ENSG00000008324	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000093183	Chromatin interaction
ENSG00000206717	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000272288	Chromatin interaction
ENSG00000206538	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10807141	0.81[AMR][1000 genomes]
rs10947531	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10947532	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1125340	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1125341	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11755393	0.80[AFR][1000 genomes]
rs11755420	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11757370	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11759151	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11965761	0.87[AMR][1000 genomes]
rs13198620	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1543558	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1543559	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1886574	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1998702	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2038839	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2038840	0.83[AMR][1000 genomes]
rs2038841	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2296360	0.82[AMR][1000 genomes]
rs2395604	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2395606	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2477508	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2492861	0.88[AMR][1000 genomes]
rs2764197	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2764198	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2764201	0.87[AMR][1000 genomes]
rs2764206	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764207	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2764208	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764211	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814951	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814952	0.81[AMR][1000 genomes]
rs2814953	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814955	0.80[EUR][1000 genomes]
rs2814956	0.80[EUR][1000 genomes]
rs2814957	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814959	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814961	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814963	0.88[AMR][1000 genomes]
rs2814966	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2814967	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2814968	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814969	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2814970	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28675115	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34141614	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34493158	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3734264	0.80[AFR][1000 genomes]
rs3734268	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3777752	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3798348	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3798352	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4259246	0.80[AFR][1000 genomes]
rs4513788	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4601124	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4624858	0.82[AMR][1000 genomes]
rs58671447	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58843872	0.89[AMR][1000 genomes]
rs59162539	0.83[AMR][1000 genomes]
rs6457787	0.85[AMR][1000 genomes]
rs6457788	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6457789	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6457795	0.80[AFR][1000 genomes]
rs66506671	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6899938	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6900188	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6900847	0.88[AMR][1000 genomes]
rs6905393	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6906129	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6906759	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6907244	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6912327	0.81[AFR][1000 genomes]
rs6921363	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6925623	0.82[AMR][1000 genomes]
rs6929567	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6930036	0.81[AMR][1000 genomes]
rs6937132	0.81[AMR][1000 genomes]
rs6937314	0.82[AMR][1000 genomes]
rs6940395	0.87[AMR][1000 genomes]
rs6942040	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71538266	0.84[AMR][1000 genomes]
rs71556966	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7341253	0.88[AMR][1000 genomes]
rs7341267	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7341329	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7739003	0.83[AMR][1000 genomes]
rs7739766	0.89[AMR][1000 genomes]
rs7739771	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7741437	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7745097	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7752060	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7752390	0.84[AMR][1000 genomes]
rs7752522	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7755926	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7755982	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7756009	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7756405	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7756949	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7759227	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7763224	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7768189	0.84[AMR][1000 genomes]
rs7768759	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7769820	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7769961	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7774697	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7776219	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs912716	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296127	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9296129	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462006	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9462009	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9462010	0.89[AMR][1000 genomes]
rs9462011	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9462015	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462018	0.85[AMR][1000 genomes]
rs9462019	0.87[AMR][1000 genomes]
rs9462020	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9462021	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9462022	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9462023	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462024	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9462026	0.82[AMR][1000 genomes]
rs9462028	0.82[AMR][1000 genomes]
rs9469857	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469858	0.89[AMR][1000 genomes]
rs9469859	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469861	0.89[AMR][1000 genomes]
rs9469862	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9469863	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469866	0.83[AMR][1000 genomes]
rs9469869	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9469870	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469871	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469872	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9469878	0.87[AMR][1000 genomes]
rs9469879	0.88[AMR][1000 genomes]
rs9469882	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9469883	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469884	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9469885	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469887	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469889	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9469891	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469892	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469893	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469894	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9469902	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469905	0.83[AMR][1000 genomes]
rs9469917	0.80[AFR][1000 genomes]
rs9689516	0.85[AMR][1000 genomes]
rs9689820	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs998278	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs6457791	UHRF1BP1	cis	Stomach	GTEx
rs6457791	UHRF1BP1	cis	Whole Blood	GTEx
rs6457791	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs6457791	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs6457791	UHRF1BP1	cis	Artery Aorta	GTEx
rs6457791	UHRF1BP1	cis	Artery Tibial	GTEx
rs6457791	UHRF1BP1	cis	Nerve Tibial	GTEx
rs6457791	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs6457791	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs6457791	SNRPC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34758200-34761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:34758600-34761600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:34758800-34760000	Active TSS	Brain Germinal Matrix	brain
4	chr6:34758800-34760600	Active TSS	Placenta Amnion	Placenta Amnion
5	chr6:34758800-34760800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:34758800-34760800	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:34758800-34760800	Active TSS	A549	lung
8	chr6:34758800-34761000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:34758800-34761000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:34758800-34761000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:34758800-34761000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:34758800-34761200	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:34758800-34761200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:34758800-34761400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:34758800-34761400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:34758800-34761600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:34758800-34761600	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:34759000-34760400	Active TSS	Colonic Mucosa	Colon
19	chr6:34759000-34760400	Active TSS	Fetal Muscle Trunk	muscle
20	chr6:34759000-34760600	Active TSS	Fetal Kidney	kidney
21	chr6:34759000-34760800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:34759000-34761000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:34759000-34761000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:34759000-34761000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:34759000-34761000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:34759000-34761000	Active TSS	Esophagus	oesophagus
27	chr6:34759000-34761000	Active TSS	Left Ventricle	heart
28	chr6:34759000-34761000	Active TSS	Ovary	ovary
29	chr6:34759000-34761000	Active TSS	Pancreas	Pancrea
30	chr6:34759000-34761000	Active TSS	Psoas Muscle	Psoas
31	chr6:34759000-34761000	Active TSS	Right Ventricle	heart
32	chr6:34759000-34761000	Active TSS	Sigmoid Colon	Sigmoid Colon
33	chr6:34759000-34761000	Active TSS	Stomach Mucosa	stomach
34	chr6:34759000-34761000	Active TSS	NHDF-Ad	bronchial
35	chr6:34759000-34761000	Active TSS	NHLF	lung
36	chr6:34759000-34761200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:34759000-34761400	Active TSS	Right Atrium	heart
38	chr6:34759000-34761400	Active TSS	HSMMtube	muscle
39	chr6:34759000-34761600	Active TSS	H1 Cell Line	embryonic stem cell
40	chr6:34759200-34760000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:34759200-34760400	Active TSS	Primary monocytes fromperipheralblood	blood
42	chr6:34759200-34760400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
43	chr6:34759200-34760400	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr6:34759200-34760400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr6:34759200-34760400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:34759200-34760400	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr6:34759200-34760400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:34759200-34760400	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:34759200-34760400	Active TSS	Brain Cingulate Gyrus	brain
50	chr6:34759200-34760400	Active TSS	Brain Hippocampus Middle	brain

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