Variant report

Variant	rs2038840
Chromosome Location	chr6:34746151-34746152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34723819..34725519-chr6:34744326..34746637,2	MCF-7	breast:
2	chr6:34725370..34727177-chr6:34745635..34747402,2	K562	blood:

Variant related genes	Relation type
ENSG00000124562	Chromatin interaction

Extended variants
information (count: 207 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10807141	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10947531	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10947532	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1125340	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1125341	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11754574	0.81[EUR][1000 genomes]
rs11755420	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11757370	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11759151	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11965761	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12177835	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12201281	0.91[EUR][1000 genomes]
rs13198620	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13219589	0.84[EUR][1000 genomes]
rs13220394	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1543558	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1543559	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1886574	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1998702	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2038839	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2038841	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2296360	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2395598	0.80[EUR][1000 genomes]
rs2395599	0.80[EUR][1000 genomes]
rs2395604	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2395606	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2477507	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2477508	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2492860	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2492861	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2744943	0.80[EUR][1000 genomes]
rs2744944	0.80[EUR][1000 genomes]
rs2764197	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2764198	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2764201	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2764206	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2764207	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2764208	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2764210	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764211	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814945	0.80[EUR][1000 genomes]
rs2814947	0.83[EUR][1000 genomes]
rs2814951	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2814952	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814953	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814955	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814956	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814957	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814958	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814959	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814961	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814963	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814966	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814967	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2814968	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2814969	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814970	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28675115	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34141614	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34493158	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34657938	0.83[EUR][1000 genomes]
rs3734264	0.83[EUR][1000 genomes]
rs3734268	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3777752	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3798348	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3798352	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4259246	0.83[EUR][1000 genomes]
rs4282407	0.84[EUR][1000 genomes]
rs4513788	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4601124	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4624858	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58671447	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58843872	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59162539	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6457787	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6457788	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457789	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6457791	0.83[AMR][1000 genomes]
rs6457795	0.83[EUR][1000 genomes]
rs66506671	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6899938	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6900188	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6900847	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6905393	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6906129	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6906759	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6907244	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6919654	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6921363	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6924898	0.84[EUR][1000 genomes]
rs6925623	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6925764	0.82[EUR][1000 genomes]
rs6929567	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6930036	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6937132	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6937314	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6937784	0.80[EUR][1000 genomes]
rs6940395	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6942040	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71538266	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71556966	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7341253	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7341267	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7341329	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7739003	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739766	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7739771	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7741398	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7741437	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7742652	0.89[EUR][1000 genomes]
rs7745097	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7748203	0.84[EUR][1000 genomes]
rs7752060	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7752390	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7752522	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7755926	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7755982	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7756009	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7756405	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7756949	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7758082	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7759128	0.83[EUR][1000 genomes]
rs7759227	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7762644	0.84[AMR][1000 genomes]
rs7763224	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7763987	0.88[EUR][1000 genomes]
rs7768189	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7768759	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7769820	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7769961	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7771778	0.87[EUR][1000 genomes]
rs7774697	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7776219	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs912716	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9296127	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9296129	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9348950	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357181	0.89[EUR][1000 genomes]
rs9366863	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9368830	0.81[EUR][1000 genomes]
rs9368832	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9380454	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462006	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462009	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462010	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9462011	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462015	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9462018	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462019	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462020	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462021	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462022	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9462023	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9462024	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9462026	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462028	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462030	0.84[EUR][1000 genomes]
rs9469857	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469858	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469859	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469861	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469862	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469863	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469866	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469869	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469870	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469871	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469872	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9469878	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469879	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9469880	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9469882	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9469883	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469884	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469885	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469887	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469889	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469891	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9469892	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9469893	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9469894	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9469899	0.80[EUR][1000 genomes]
rs9469902	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9469905	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9469909	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469914	0.84[EUR][1000 genomes]
rs9469917	0.83[EUR][1000 genomes]
rs9689516	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9689820	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs998278	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs2038840	UHRF1BP1	cis	Whole Blood	GTEx
rs2038840	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs2038840	UHRF1BP1	cis	Stomach	GTEx
rs2038840	UHRF1BP1	cis	Artery Aorta	GTEx
rs2038840	SNRPC	Cis_1M	lymphoblastoid	RTeQTL
rs2038840	UHRF1BP1	cis	Artery Tibial	GTEx
rs2038840	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs2038840	UHRF1BP1	cis	lung	GTEx
rs2038840	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs2038840	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs2038840	UHRF1BP1	cis	Nerve Tibial	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:34726800-34747800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:34727200-34746600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:34728600-34748400	Weak transcription	Fetal Heart	heart
6	chr6:34737000-34746800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:34737400-34758800	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:34739000-34747600	Weak transcription	Gastric	stomach
9	chr6:34739200-34747400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:34739800-34747000	Weak transcription	A549	lung
11	chr6:34741200-34749000	Strong transcription	Fetal Intestine Small	intestine
12	chr6:34741200-34749000	Strong transcription	Fetal Stomach	stomach
13	chr6:34741200-34758600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:34741400-34759000	Weak transcription	Ovary	ovary
15	chr6:34741600-34747200	Weak transcription	NHDF-Ad	bronchial
16	chr6:34741600-34758800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:34741800-34747000	Weak transcription	GM12878-XiMat	blood
18	chr6:34742000-34758600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:34742000-34759000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:34742000-34759000	Weak transcription	Fetal Lung	lung
21	chr6:34742600-34746600	Weak transcription	Lung	lung
22	chr6:34742600-34750400	Weak transcription	Hela-S3	cervix
23	chr6:34742800-34750400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:34742800-34759000	Weak transcription	Left Ventricle	heart
25	chr6:34743000-34746800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:34743200-34746800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:34743200-34749200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:34743200-34749800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:34743200-34751200	Weak transcription	Fetal Muscle Leg	muscle
30	chr6:34743200-34751800	Weak transcription	Brain Germinal Matrix	brain
31	chr6:34743200-34754000	Weak transcription	HSMMtube	muscle
32	chr6:34743200-34758000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:34743200-34758600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:34743200-34758800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:34743200-34758800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:34743400-34748800	Weak transcription	Thymus	Thymus
37	chr6:34743400-34749600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:34743400-34759000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:34743400-34759000	Weak transcription	Aorta	Aorta
40	chr6:34743600-34755400	Weak transcription	HepG2	liver
41	chr6:34743600-34758600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr6:34743600-34758600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:34743800-34746200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:34743800-34746200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:34743800-34746400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:34743800-34746400	Weak transcription	Fetal Kidney	kidney
47	chr6:34743800-34747000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:34743800-34747000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:34743800-34747200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:34743800-34747400	Weak transcription	Duodenum Mucosa	Duodenum

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