Variant report

Variant	rs7341253
Chromosome Location	chr6:34726838-34726839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34662895..34664989-chr6:34725317..34726977,2	MCF-7	breast:
2	chr6:34663247..34666234-chr6:34723415..34727175,3	K562	blood:
3	chr6:34723754..34729214-chr6:34758122..34762652,9	MCF-7	breast:
4	chr6:34726219..34728459-chr6:34742112..34744643,2	K562	blood:
5	chr6:34663907..34669185-chr6:34723600..34728462,6	MCF-7	breast:
6	chr6:34726193..34732287-chr6:34732320..34736678,10	K562	blood:
7	chr6:34723587..34727193-chr6:34757798..34760917,6	K562	blood:

Variant related genes	Relation type
ENSG00000196821	Chromatin interaction
ENSG00000065060	Chromatin interaction
ENSG00000272288	Chromatin interaction

Extended variants
information (count: 227 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:215)

rs_ID	r²[population]
rs10807141	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10947531	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10947532	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1125340	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1125341	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11754574	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11755393	0.85[CEU][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs11755420	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11757370	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11759151	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11965761	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12177835	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12201281	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13198620	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13215181	0.84[AMR][1000 genomes]
rs13219589	0.80[EUR][1000 genomes]
rs13220394	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1543558	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1543559	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs188190	0.95[CEU][hapmap]
rs1886574	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1998702	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2038839	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2038840	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2038841	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs205260	0.95[CEU][hapmap]
rs205283	0.86[CEU][hapmap]
rs205286	0.95[CEU][hapmap]
rs2235568	0.90[CEU][hapmap]
rs2235569	0.89[CEU][hapmap]
rs2296360	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2395598	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs2395604	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2395606	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2477507	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2477508	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2492860	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2492861	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2744943	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2744944	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2744949	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2744957	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs2744961	1.00[CEU][hapmap];0.84[YRI][hapmap];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2744974	0.94[CEU][hapmap]
rs2764197	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764198	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764201	1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764206	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2764207	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2764208	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2764210	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2764211	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814942	0.95[CEU][hapmap]
rs2814945	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2814947	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2814951	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814952	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2814953	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2814955	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2814956	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814957	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814958	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814959	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814961	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814963	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814966	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814967	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2814968	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2814969	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814970	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814971	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2814972	0.95[CEU][hapmap]
rs2814981	0.95[CEU][hapmap]
rs2814984	0.95[CEU][hapmap]
rs2814992	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs2815004	1.00[CEU][hapmap]
rs28675115	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34141614	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34493158	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34657938	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3734264	1.00[CEU][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3734268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3777752	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3798348	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3798352	0.85[CEU][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3800458	0.90[CEU][hapmap]
rs412392	0.95[CEU][hapmap]
rs4259246	1.00[CEU][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4282407	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4513788	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4601124	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4624858	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58671447	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58843872	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59162539	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6457787	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6457788	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457789	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457791	0.88[AMR][1000 genomes]
rs6457794	0.81[AMR][1000 genomes]
rs6457795	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66506671	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6899938	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6900188	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6900847	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905393	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6906129	0.94[CEU][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6906759	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6907244	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6912327	0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs6919654	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6921363	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6924898	1.00[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6925623	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6925764	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6929567	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6930036	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6937132	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6937314	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6939600	0.83[AMR][1000 genomes]
rs6940395	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6942040	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71538266	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71556966	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7341267	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7341329	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739003	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7739766	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7739771	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7741398	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7741437	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742652	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7745097	1.00[CEU][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7748203	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7752060	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7752390	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7752522	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7755926	1.00[CEU][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7755982	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756009	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756405	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756949	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7758082	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7759128	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7759227	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7762644	0.89[AMR][1000 genomes]
rs7763224	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763987	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7768189	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7768759	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7769820	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7769961	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7771778	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7774697	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7776219	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs912716	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296127	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296129	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9348950	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357181	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9366863	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368830	0.81[EUR][1000 genomes]
rs9368832	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380454	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380455	1.00[CEU][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes]
rs9462006	1.00[CEU][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9462009	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9462010	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462011	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462015	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462018	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462019	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462020	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462021	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462023	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462024	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462026	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9462028	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9462030	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469856	0.84[AMR][1000 genomes]
rs9469857	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469858	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469859	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469861	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469862	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469863	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469866	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469869	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469870	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469871	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469872	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469878	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469879	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469880	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9469882	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469883	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469884	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469885	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469886	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9469887	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469889	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469891	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469892	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469893	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9469894	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469899	0.81[AMR][1000 genomes]
rs9469902	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9469905	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469909	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469914	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469917	1.00[CEU][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9689516	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689820	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs998278	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs7341253	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs7341253	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs7341253	UHRF1BP1	cis	multi-tissue	Pritchard
rs7341253	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs7341253	UHRF1BP1	cis	Artery Aorta	GTEx
rs7341253	UHRF1BP1	cis	Nerve Tibial	GTEx
rs7341253	UHRF1BP1	cis	Stomach	GTEx
rs7341253	UHRF1BP1	cis	Whole Blood	GTEx
rs7341253	SNRPC	cis	lung	GTEx
rs7341253	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs7341253	UHRF1BP1	cis	Artery Tibial	GTEx
rs7341253	UHRF1BP1	cis	lung	GTEx
rs7341253	C6orf107	cis	uninvolved skin	skin_eQTL
rs7341253	SNRPC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34725800-34729600	Weak transcription	Aorta	Aorta
2	chr6:34726000-34727200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr6:34726000-34727200	Enhancers	Pancreas	Pancrea
4	chr6:34726000-34727400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:34726000-34727400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:34726000-34729000	Weak transcription	Fetal Kidney	kidney
7	chr6:34726000-34729200	Weak transcription	Ovary	ovary
8	chr6:34726000-34730400	Weak transcription	Psoas Muscle	Psoas
9	chr6:34726000-34731000	Weak transcription	Gastric	stomach
10	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:34726200-34727000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:34726200-34727000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:34726200-34727000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:34726200-34727000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:34726200-34727000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:34726200-34727000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:34726200-34727000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:34726200-34727000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:34726200-34727000	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:34726200-34727000	Weak transcription	Fetal Stomach	stomach
22	chr6:34726200-34727000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:34726200-34727000	Weak transcription	A549	lung
24	chr6:34726200-34727000	Weak transcription	NHLF	lung
25	chr6:34726200-34727200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:34726200-34727200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:34726200-34727400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:34726200-34727400	Weak transcription	Adipose Nuclei	Adipose
29	chr6:34726200-34727400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:34726200-34727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:34726200-34727800	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:34726200-34727800	Genic enhancers	K562	blood
33	chr6:34726200-34729000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:34726200-34729400	Weak transcription	Right Atrium	heart
35	chr6:34726200-34729600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:34726200-34729600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:34726200-34729600	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr6:34726200-34729800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:34726200-34729800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:34726200-34729800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:34726200-34729800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:34726200-34729800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:34726200-34729800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:34726200-34729800	Weak transcription	Thymus	Thymus
45	chr6:34726200-34729800	Weak transcription	HSMMtube	muscle
46	chr6:34726200-34730000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:34726200-34730200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:34726200-34730200	Weak transcription	Brain Anterior Caudate	brain
49	chr6:34726200-34730400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:34726200-34730400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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