Variant report

Variant	rs7752390
Chromosome Location	chr6:34790624-34790625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34759204..34760846-chr6:34788555..34790886,2	K562	blood:
2	chr6:34759201..34762395-chr6:34788232..34791970,5	MCF-7	breast:
3	chr6:34758599..34760857-chr6:34787566..34790962,3	K562	blood:

Variant related genes	Relation type
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 205 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:185)

rs_ID	r²[population]
rs10807141	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10947531	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10947532	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1125340	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1125341	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11754574	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11755393	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11755420	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11757370	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11759151	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11965761	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12177835	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12201281	0.87[EUR][1000 genomes]
rs13198620	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13219589	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13220394	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1543558	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1543559	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1886574	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1998702	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2038839	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038840	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2038841	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2296360	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2395604	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2395606	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2477507	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2477508	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2492860	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2492861	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764197	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764198	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764201	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2764206	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764207	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2764208	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764210	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2764211	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814951	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2814952	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814953	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814955	0.89[EUR][1000 genomes]
rs2814956	0.89[EUR][1000 genomes]
rs2814957	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814958	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814959	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814961	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814963	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814966	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814967	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2814968	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2814969	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814970	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28675115	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34141614	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34493158	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34657938	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3734264	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3734268	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3777752	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798348	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798352	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4259246	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4282407	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4513788	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4601124	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4624858	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58671447	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58843872	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59162539	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6457787	0.84[AMR][1000 genomes]
rs6457788	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6457789	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6457791	0.84[AMR][1000 genomes]
rs6457794	0.91[AMR][1000 genomes]
rs6457795	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66506671	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899938	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6900188	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6900847	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6905393	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6906129	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6906759	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6907244	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6912327	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6919654	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6921363	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6924898	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925623	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925764	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6929567	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6930036	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6937132	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6937314	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6939600	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6940395	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6942040	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71538266	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71556966	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7341253	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7341267	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7341329	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7739003	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7739766	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7739771	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7741398	0.84[EUR][1000 genomes]
rs7741437	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7742652	0.85[EUR][1000 genomes]
rs7745097	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7748203	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752060	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752522	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7755926	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7755982	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7756009	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7756405	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7756949	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7758082	0.89[EUR][1000 genomes]
rs7759227	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7762644	0.81[AMR][1000 genomes]
rs7763224	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7763987	0.84[EUR][1000 genomes]
rs7768189	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7768759	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769820	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7769961	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7771778	0.83[EUR][1000 genomes]
rs7774697	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7776219	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs912716	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9296127	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9296129	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348950	0.85[EUR][1000 genomes]
rs9357181	0.85[EUR][1000 genomes]
rs9366863	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368832	0.86[EUR][1000 genomes]
rs9380454	0.85[EUR][1000 genomes]
rs9462006	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9462009	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9462010	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9462011	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9462015	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9462018	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462019	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9462020	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462021	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462022	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462023	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462024	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462026	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462028	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462030	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9469857	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9469858	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469859	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469861	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469862	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9469863	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469866	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9469869	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9469870	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469871	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469872	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9469878	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469879	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469880	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469882	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469883	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469884	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469885	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469887	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469889	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469891	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469892	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469893	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469894	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469899	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9469902	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469905	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469909	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469914	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469917	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9689516	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9689820	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs998278	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
18	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
19	nsv1016703	chr6:34784801-34827693	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
20	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs7752390	UHRF1BP1	cis	Stomach	GTEx
rs7752390	UHRF1BP1	cis	Artery Tibial	GTEx
rs7752390	UHRF1BP1	cis	Artery Aorta	GTEx
rs7752390	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs7752390	UHRF1BP1	cis	lung	GTEx
rs7752390	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs7752390	UHRF1BP1	cis	Whole Blood	GTEx
rs7752390	SNRPC	Cis_1M	lymphoblastoid	RTeQTL
rs7752390	UHRF1BP1	cis	Nerve Tibial	GTEx
rs7752390	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs7752390	C6orf107	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34761400-34790800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:34764000-34803800	Weak transcription	HSMM	muscle
3	chr6:34773200-34791400	Weak transcription	Gastric	stomach
4	chr6:34775400-34802400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:34779200-34797000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:34779200-34807400	Weak transcription	A549	lung
7	chr6:34779400-34796400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:34779400-34841000	Weak transcription	NH-A	brain
9	chr6:34779600-34791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:34779600-34791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:34779600-34796200	Weak transcription	NHEK	skin
12	chr6:34780800-34794000	Weak transcription	Aorta	Aorta
13	chr6:34781000-34790800	Weak transcription	Brain Angular Gyrus	brain
14	chr6:34781000-34797000	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:34781400-34790800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:34781600-34791000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:34781600-34791400	Weak transcription	Brain Substantia Nigra	brain
18	chr6:34781600-34824000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:34782800-34790800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:34783200-34807400	Weak transcription	Psoas Muscle	Psoas
21	chr6:34785400-34790800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:34785600-34802400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:34786600-34838800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:34787400-34791200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:34787600-34791400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:34787600-34802400	Weak transcription	Right Ventricle	heart
27	chr6:34787600-34807400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:34787800-34793200	Weak transcription	NHDF-Ad	bronchial
29	chr6:34787800-34803600	Weak transcription	Esophagus	oesophagus
30	chr6:34788000-34791000	Weak transcription	Colonic Mucosa	Colon
31	chr6:34788000-34802600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:34788200-34790800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:34788200-34791000	Weak transcription	Ovary	ovary
34	chr6:34788200-34791400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:34788200-34792400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:34788200-34802000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:34788200-34831800	Weak transcription	HUVEC	blood vessel
38	chr6:34788400-34790800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:34788400-34790800	Weak transcription	Brain Hippocampus Middle	brain
40	chr6:34788400-34791000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:34788400-34791000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:34788400-34796400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:34788400-34802000	Weak transcription	Small Intestine	intestine
44	chr6:34788400-34826600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:34788400-34826800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:34788400-34830800	Weak transcription	Fetal Heart	heart
47	chr6:34788600-34790800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:34789000-34791800	Strong transcription	Primary B cells from cord blood	blood
49	chr6:34789000-34791800	Strong transcription	Primary T cells from cord blood	blood
50	chr6:34789000-34802400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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