Variant report

Variant	rs7771778
Chromosome Location	chr6:34660324-34660325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:34660039-34660362	MCF10A-Er-Src	breast:	n/a	n/a
2	MYC	chr6:34660176-34660376	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr6:34660154-34660334	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr6:34660189-34660370	K562	blood:	n/a	n/a
5	FOS	chr6:34660038-34660396	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr6:34660037-34660355	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:34660294-34660344	ECC-1	luminal epithelium:	n/a
2	chr6:34660294-34660344	BJ	skin:	n/a
3	chr6:34660294-34660344	NH-A	brain:	n/a
4	chr6:34660294-34660344	HAEpiC	amniotic membrane:	n/a
5	chr6:34660294-34660344	Hepatocyte	liver:	n/a
6	chr6:34660294-34660344	NHBE	bronchial:	n/a
7	chr6:34660294-34660344	HCM	heart:	n/a
8	chr6:34660294-34660344	U87	brain:	n/a
9	chr6:34660294-34660344	HIPEpiC	eye:	n/a
10	chr6:34660294-34660344	LNCaP	prostate:	n/a
11	chr6:34660294-34660344	HNPCEpiC	eye:	n/a
12	chr6:34660294-34660344	MCF10A-Er-Src	breast:	n/a
13	chr6:34660294-34660344	IMR90	lung:	fetal
14	chr6:34660294-34660344	GM06990	blood:	n/a
15	chr6:34660294-34660344	HCF	heart:	n/a
16	chr6:34660294-34660344	SAEC	small airway:	n/a
17	chr6:34660294-34660344	HEEpiC	esophagus:	n/a
18	chr6:34660294-34660344	K562	blood:	n/a
19	chr6:34660294-34660344	MCF-7	breast:	n/a
20	chr6:34660294-34660344	T-47D	breast:	n/a
21	chr6:34660294-34660344	AG04449	skin:	fetal
22	chr6:34660294-34660344	HRPEpiC	eye:	n/a
23	chr6:34660294-34660344	AG10803	skin:	n/a
24	chr6:34660294-34660344	GM12878	blood:	n/a
25	chr6:34660294-34660344	NT2-D1	testis:	n/a
26	chr6:34660294-34660344	HRE	kidney:	n/a
27	chr6:34660294-34660344	GM19239	blood:	n/a
28	chr6:34660294-34660344	NHDF-neo	bronchial:	n/a
29	chr6:34660294-34660344	HL-60	blood:	n/a
30	chr6:34660294-34660344	Caco-2	colon:	n/a
31	chr6:34660294-34660344	PANC-1	pancreas:	n/a
32	chr6:34660294-34660344	A549	lung:	n/a
33	chr6:34660294-34660344	AG09319	gingival:	n/a
34	chr6:34660294-34660344	SK-N-SH	brain:	n/a
35	chr6:34660294-34660344	ovcar-3	ovarian:	n/a
36	chr6:34660294-34660344	Hela-S3	cervix:	n/a
37	chr6:34660294-34660344	ProgFib	skin:	n/a
38	chr6:34660294-34660344	HCPEpiC	choroid plexus:	n/a
39	chr6:34660294-34660344	SK-N-SH_RA	brain:	n/a
40	chr6:34660294-34660344	SKMC	muscle:	n/a
41	chr6:34660294-34660344	RPTEC	kidney:	n/a
42	chr6:34660294-34660344	HCT-116	colon:	n/a
43	chr6:34660294-34660344	HPAEpiC	pulmonary alveolar:	n/a
44	chr6:34660294-34660344	PrEC	prostate:	n/a
45	chr6:34660294-34660344	GM12891	blood:	n/a
46	chr6:34660294-34660344	Jurkat	blood:	n/a
47	chr6:34660294-34660344	H1-hESC	embryonic stem cell:	embryo
48	chr6:34660294-34660344	HUVEC	blood vessel:	n/a
49	chr6:34660294-34660344	SK-N-MC	brain:	n/a
50	chr6:34660294-34660344	HepG2	liver:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34657528..34660560-chr6:34662754..34664755,3	MCF-7	breast:
2	chr6:34658536..34661755-chr6:34723904..34726636,3	MCF-7	breast:
3	chr6:34659775..34661894-chr6:34663558..34666240,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000238484	TF binding region
ENSG00000272288	TF binding region
ENSG00000272288	CpG island
ENSG00000238484	CpG island
ENSG00000196821	Chromatin interaction
ENSG00000124562	Chromatin interaction
ENSG00000272288	Chromatin interaction

Extended variants
information (count: 234 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10807141	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10947531	0.89[EUR][1000 genomes]
rs10947532	0.87[EUR][1000 genomes]
rs1125340	0.87[EUR][1000 genomes]
rs1125341	0.87[EUR][1000 genomes]
rs11755420	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11757370	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11759151	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11965761	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1201873	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1201874	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12201281	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13198620	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13220394	0.83[EUR][1000 genomes]
rs1543558	0.87[EUR][1000 genomes]
rs1543559	0.87[EUR][1000 genomes]
rs188190	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1886574	0.84[EUR][1000 genomes]
rs1998702	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2038839	0.88[EUR][1000 genomes]
rs2038840	0.87[EUR][1000 genomes]
rs2038841	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs205258	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs205259	0.83[ASN][1000 genomes]
rs205260	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs205286	0.83[ASN][1000 genomes]
rs2235568	0.88[ASN][1000 genomes]
rs2235569	0.88[ASN][1000 genomes]
rs2262245	0.82[ASN][1000 genomes]
rs2263329	0.89[ASN][1000 genomes]
rs2296360	0.82[EUR][1000 genomes]
rs2395598	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2395599	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395604	0.87[EUR][1000 genomes]
rs2395606	0.88[EUR][1000 genomes]
rs2477507	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2477508	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2492860	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2492861	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2744941	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2744943	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2744944	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2744949	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2744957	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2744959	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2744961	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2744974	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764197	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764198	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764201	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2764206	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764207	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764208	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2764210	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2764211	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814945	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2814946	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2814947	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2814949	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814951	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814952	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814953	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814955	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814956	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2814957	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814958	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814959	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814961	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2814963	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814966	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814967	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2814968	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2814969	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814970	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814972	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2814974	0.88[ASN][1000 genomes]
rs2814975	0.81[ASN][1000 genomes]
rs2814976	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814979	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814981	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814984	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814987	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2814988	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814991	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2814992	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2814995	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815001	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2815004	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28675115	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34141614	0.87[EUR][1000 genomes]
rs34493158	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34657938	0.80[EUR][1000 genomes]
rs3734264	0.82[EUR][1000 genomes]
rs3734268	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3777752	0.88[EUR][1000 genomes]
rs3798348	0.88[EUR][1000 genomes]
rs3798352	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3800458	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs412392	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4259246	0.81[EUR][1000 genomes]
rs4513788	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4601124	0.88[EUR][1000 genomes]
rs4624858	0.82[EUR][1000 genomes]
rs58671447	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58843872	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59162539	0.89[EUR][1000 genomes]
rs6457787	0.81[ASN][1000 genomes]
rs6457788	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457789	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457795	0.82[EUR][1000 genomes]
rs66506671	0.88[EUR][1000 genomes]
rs6899938	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6900188	0.91[EUR][1000 genomes]
rs6900847	0.88[EUR][1000 genomes]
rs6905393	0.88[EUR][1000 genomes]
rs6906129	0.83[EUR][1000 genomes]
rs6906759	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6907244	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6919654	0.83[EUR][1000 genomes]
rs6921363	0.88[EUR][1000 genomes]
rs6924898	0.83[EUR][1000 genomes]
rs6925623	0.82[EUR][1000 genomes]
rs6925764	0.81[EUR][1000 genomes]
rs6929567	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6930036	0.81[EUR][1000 genomes]
rs6937132	0.82[EUR][1000 genomes]
rs6937314	0.83[EUR][1000 genomes]
rs6937784	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6940395	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6942040	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71538266	0.84[EUR][1000 genomes]
rs71556966	0.88[EUR][1000 genomes]
rs7341253	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7341267	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7341329	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7739003	0.81[EUR][1000 genomes]
rs7739766	0.90[EUR][1000 genomes]
rs7739771	0.87[EUR][1000 genomes]
rs7741398	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741437	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7742652	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7745097	0.86[EUR][1000 genomes]
rs7748203	0.83[EUR][1000 genomes]
rs7752060	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7752390	0.83[EUR][1000 genomes]
rs7752522	0.90[EUR][1000 genomes]
rs7755926	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7755982	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7756009	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7756405	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7756949	0.87[EUR][1000 genomes]
rs7758082	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7759128	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7759227	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7763224	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7763987	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7768189	0.85[EUR][1000 genomes]
rs7768759	0.86[EUR][1000 genomes]
rs7769820	0.88[EUR][1000 genomes]
rs7769961	0.88[EUR][1000 genomes]
rs7774697	0.87[EUR][1000 genomes]
rs7776219	0.86[EUR][1000 genomes]
rs912716	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296127	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296129	0.88[EUR][1000 genomes]
rs9348950	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9357181	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9366863	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368830	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9368832	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380454	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380455	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9462006	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462009	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462010	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462011	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462015	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462018	0.87[EUR][1000 genomes]
rs9462019	0.87[EUR][1000 genomes]
rs9462020	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9462021	0.91[EUR][1000 genomes]
rs9462022	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9462023	0.88[EUR][1000 genomes]
rs9462024	0.88[EUR][1000 genomes]
rs9462026	0.84[EUR][1000 genomes]
rs9462028	0.82[EUR][1000 genomes]
rs9462030	0.81[EUR][1000 genomes]
rs9469835	0.82[EUR][1000 genomes]
rs9469857	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469858	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469859	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469861	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469862	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9469863	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469866	0.86[EUR][1000 genomes]
rs9469869	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469870	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469871	0.93[EUR][1000 genomes]
rs9469872	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469878	0.86[EUR][1000 genomes]
rs9469879	0.89[EUR][1000 genomes]
rs9469880	0.84[EUR][1000 genomes]
rs9469882	0.91[EUR][1000 genomes]
rs9469883	0.91[EUR][1000 genomes]
rs9469884	0.90[EUR][1000 genomes]
rs9469885	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9469887	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9469889	0.88[EUR][1000 genomes]
rs9469891	0.89[EUR][1000 genomes]
rs9469892	0.88[EUR][1000 genomes]
rs9469893	0.87[EUR][1000 genomes]
rs9469894	0.86[EUR][1000 genomes]
rs9469902	0.85[EUR][1000 genomes]
rs9469905	0.83[EUR][1000 genomes]
rs9469909	0.83[EUR][1000 genomes]
rs9469914	0.81[EUR][1000 genomes]
rs9469917	0.82[EUR][1000 genomes]
rs9689516	0.90[EUR][1000 genomes]
rs9689820	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs998278	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830640	chr6:34542489-34714677	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv885794	chr6:34561585-34673149	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
13	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv5255	chr6:34658569-34703563	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs7771778	SNRPC	Cis_1M	lymphoblastoid	RTeQTL
rs7771778	UHRF1BP1	cis	Artery Tibial	GTEx
rs7771778	UHRF1BP1	cis	Stomach	GTEx
rs7771778	UHRF1BP1	cis	Nerve Tibial	GTEx
rs7771778	UHRF1BP1	cis	lung	GTEx
rs7771778	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs7771778	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs7771778	UHRF1BP1	cis	Whole Blood	GTEx
rs7771778	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs7771778	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs7771778	UHRF1BP1	cis	Artery Aorta	GTEx

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34626000-34662000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:34626800-34662400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:34633000-34662800	Weak transcription	Aorta	Aorta
4	chr6:34634800-34663200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:34636400-34662200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:34639800-34662800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:34639800-34662800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:34641400-34662800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:34641800-34661200	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:34641800-34663200	Weak transcription	Gastric	stomach
11	chr6:34642200-34663000	Weak transcription	Thymus	Thymus
12	chr6:34643000-34661200	Weak transcription	Right Atrium	heart
13	chr6:34643000-34662800	Weak transcription	Stomach Mucosa	stomach
14	chr6:34647800-34660800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:34647800-34661000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:34647800-34662000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:34647800-34662200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:34647800-34662400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:34647800-34662600	Weak transcription	Ovary	ovary
20	chr6:34647800-34662800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:34647800-34662800	Weak transcription	HSMMtube	muscle
22	chr6:34648000-34662600	Weak transcription	Right Ventricle	heart
23	chr6:34648000-34662800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:34648400-34662000	Weak transcription	Brain Anterior Caudate	brain
25	chr6:34649200-34660400	Weak transcription	Primary T cells from cord blood	blood
26	chr6:34649200-34662200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:34649200-34662600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:34649400-34661600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:34649400-34661600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:34649400-34662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:34649400-34662000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:34649400-34662000	Weak transcription	Osteobl	bone
33	chr6:34649400-34662400	Weak transcription	HSMM	muscle
34	chr6:34649600-34661000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:34649600-34661000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:34649600-34661000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:34649600-34662000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr6:34649800-34660400	Weak transcription	Fetal Intestine Small	intestine
39	chr6:34652800-34661200	Weak transcription	Hela-S3	cervix
40	chr6:34652800-34662200	Weak transcription	A549	lung
41	chr6:34653000-34662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:34654000-34660800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:34655400-34663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:34656000-34662600	Weak transcription	Fetal Thymus	thymus
45	chr6:34656200-34660400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:34656200-34661600	Weak transcription	Brain Germinal Matrix	brain
47	chr6:34656200-34662200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:34656200-34662800	Enhancers	Liver	Liver
49	chr6:34656400-34661600	Weak transcription	Fetal Intestine Large	intestine
50	chr6:34656600-34661800	Weak transcription	Fetal Stomach	stomach

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