Variant report

Variant	rs9469835
Chromosome Location	chr6:34611001-34611002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34610887..34612849-chr6:34723663..34725571,2	MCF-7	breast:
2	chr6:34610138..34612719-chr6:34663419..34665445,2	MCF-7	breast:
3	chr6:34202586..34205508-chr6:34609619..34611932,2	K562	blood:
4	chr6:34608904..34611557-chr6:34612149..34614331,2	K562	blood:

Variant related genes	Relation type
ENSG00000196821	Chromatin interaction
ENSG00000272288	Chromatin interaction
ENSG00000124562	Chromatin interaction
ENSG00000137309	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1201873	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1201874	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs188190	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs205258	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs205259	0.82[EUR][1000 genomes]
rs205260	0.83[EUR][1000 genomes]
rs205283	0.82[AMR][1000 genomes]
rs205286	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2235568	0.82[EUR][1000 genomes]
rs2235569	0.82[EUR][1000 genomes]
rs2263329	0.81[EUR][1000 genomes]
rs2395598	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2395599	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744941	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2744943	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2744949	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2744957	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744958	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2744959	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2744973	0.80[EUR][1000 genomes]
rs2744974	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2814945	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2814946	0.81[EUR][1000 genomes]
rs2814947	0.81[EUR][1000 genomes]
rs2814972	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2814974	0.82[EUR][1000 genomes]
rs2814975	0.81[EUR][1000 genomes]
rs2814976	0.83[EUR][1000 genomes]
rs2814979	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2814981	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2814984	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2814987	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2814988	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2814991	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2814992	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2814995	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2815001	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2815004	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs412392	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6937784	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7742652	0.80[EUR][1000 genomes]
rs7763987	0.81[AMR][1000 genomes]
rs7771778	0.82[EUR][1000 genomes]
rs9348950	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9357181	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9380454	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830640	chr6:34542489-34714677	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv885794	chr6:34561585-34673149	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
13	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs9469835	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs9469835	UHRF1BP1	cis	Heart Left Ventricle	GTEx
rs9469835	UHRF1BP1	cis	Artery Aorta	GTEx
rs9469835	UHRF1BP1	cis	Whole Blood	GTEx
rs9469835	SNRPC	Cis_1M	lymphoblastoid	RTeQTL
rs9469835	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs9469835	UHRF1BP1	cis	Stomach	GTEx
rs9469835	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs9469835	UHRF1BP1	cis	lung	GTEx
rs9469835	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs9469835	UHRF1BP1	cis	Artery Tibial	GTEx
rs9469835	UHRF1BP1	cis	Nerve Tibial	GTEx

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34556200-34612200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:34557400-34612400	Weak transcription	Fetal Kidney	kidney
3	chr6:34567000-34612200	Weak transcription	Fetal Lung	lung
4	chr6:34567800-34612400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:34570400-34612600	Weak transcription	Brain Anterior Caudate	brain
6	chr6:34570800-34618800	Weak transcription	Brain Angular Gyrus	brain
7	chr6:34571000-34621400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:34571000-34624000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:34572400-34612600	Weak transcription	Aorta	Aorta
10	chr6:34574400-34612400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr6:34574400-34623400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:34574600-34612600	Weak transcription	Gastric	stomach
13	chr6:34574600-34613600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:34574600-34613600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:34574800-34611800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:34574800-34612200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:34574800-34612400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:34574800-34612400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:34574800-34612600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:34574800-34613200	Weak transcription	Small Intestine	intestine
21	chr6:34575000-34612400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:34575000-34612400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:34575000-34612600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:34575000-34618800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:34575600-34611200	Weak transcription	Placenta	Placenta
26	chr6:34575800-34612000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr6:34577400-34613400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:34577400-34618600	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:34578800-34612400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:34579200-34614200	Weak transcription	Pancreas	Pancrea
31	chr6:34579800-34612600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:34582800-34613200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:34584000-34612000	Weak transcription	Adipose Nuclei	Adipose
34	chr6:34584200-34612000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:34584200-34612200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr6:34584400-34613000	Weak transcription	Esophagus	oesophagus
37	chr6:34584800-34612200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:34585400-34611600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:34586000-34624200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:34587400-34624200	Weak transcription	Spleen	Spleen
41	chr6:34590400-34612400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:34593000-34623600	Weak transcription	Colonic Mucosa	Colon
43	chr6:34596800-34613200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:34597800-34613400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:34598000-34620000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:34598200-34612600	Weak transcription	HUVEC	blood vessel
47	chr6:34598400-34612000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:34598600-34614200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:34598800-34612400	Weak transcription	Primary B cells from cord blood	blood
50	chr6:34598800-34619200	Weak transcription	NH-A	brain

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