Variant report

Variant	rs2395598
Chromosome Location	chr6:34640686-34640687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr6:34640424-34640919	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:34639498-34641830	GM12891	blood:	n/a	n/a
3	TBP	chr6:34640570-34641924	GM12878	blood:	n/a	n/a
4	SPI1	chr6:34640417-34640765	GM12891	blood:	n/a	n/a
5	CUX1	chr6:34640383-34640960	GM12878	blood:	n/a	n/a
6	STAT3	chr6:34640648-34641937	GM12878	blood:	n/a	n/a
7	CHD1	chr6:34639577-34641767	GM12878	blood:	n/a	n/a
8	NFIC	chr6:34640132-34642350	GM12878	blood:	n/a	n/a
9	ZC3H11A	chr6:34640685-34640686	K562	blood:	n/a	n/a
10	ARID3A	chr6:34640649-34640721	K562	blood:	n/a	n/a
11	RELA	chr6:34640449-34641830	GM19099	blood:	n/a	n/a
12	POLR2A	chr6:34639418-34641826	GM12878	blood:	n/a	n/a
13	RELA	chr6:34640439-34641057	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:34640316-34641936	GM12878	blood:	n/a	n/a
15	MTA3	chr6:34639368-34640971	GM12878	blood:	n/a	n/a
16	SPI1	chr6:34640424-34640687	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:34640550-34641143	GM12892	blood:	n/a	n/a
18	EBF1	chr6:34640608-34641826	GM12878	blood:	n/a	n/a
19	IKZF1	chr6:34640494-34641048	GM12878	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34204487..34207183-chr6:34640663..34642574,2	K562	blood:
2	chr6:34640245..34642363-chr6:34759538..34762413,2	K562	blood:

No data

Variant related genes	Relation type
C6orf106	TF binding region
ENSG00000137309	Chromatin interaction
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 188 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs10807141	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10947531	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.80[EUR][1000 genomes]
rs11755393	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs11755420	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs11757370	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs11759151	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11965761	0.81[EUR][1000 genomes]
rs1201873	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1201874	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12201281	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13220394	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs188190	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1998702	0.84[EUR][1000 genomes]
rs2038840	0.80[EUR][1000 genomes]
rs2038841	0.83[EUR][1000 genomes]
rs205258	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205259	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs205260	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs205283	0.88[CEU][hapmap]
rs205286	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2235568	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2235569	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2262245	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2263329	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2296360	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2395599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395604	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2477507	0.83[EUR][1000 genomes]
rs2477508	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2492860	0.82[EUR][1000 genomes]
rs2492861	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2744941	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2744943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2744944	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2744949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2744957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2744959	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2744961	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2744973	0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2744974	0.95[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764197	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764198	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2764201	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2764206	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2764207	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs2764208	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs2764210	0.81[EUR][1000 genomes]
rs2764211	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814942	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2814945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2814946	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2814947	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814949	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2814951	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814952	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814953	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814955	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814956	0.83[EUR][1000 genomes]
rs2814957	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814958	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814959	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814961	0.83[EUR][1000 genomes]
rs2814963	0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814966	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814967	0.83[EUR][1000 genomes]
rs2814968	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs2814969	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814970	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814971	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs2814972	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814974	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814975	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2814976	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814978	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814979	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814981	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2814984	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2814987	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2814988	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2814991	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2814992	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2814995	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2815001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675115	0.83[EUR][1000 genomes]
rs34493158	0.84[EUR][1000 genomes]
rs3734264	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs3734268	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs3798352	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs3800458	0.92[CEU][hapmap]
rs412392	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4259246	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs4513788	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58671447	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58843872	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59162539	0.80[EUR][1000 genomes]
rs6457795	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6457796	0.80[YRI][hapmap]
rs6899938	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6900188	0.82[EUR][1000 genomes]
rs6900847	0.81[EUR][1000 genomes]
rs6906129	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs6906759	0.84[EUR][1000 genomes]
rs6907244	0.82[EUR][1000 genomes]
rs6912327	0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6924898	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs6929567	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6937314	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs6937784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940395	0.81[EUR][1000 genomes]
rs6942040	0.80[EUR][1000 genomes]
rs7341253	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs7341267	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs7341329	0.84[EUR][1000 genomes]
rs7739766	0.81[EUR][1000 genomes]
rs7739771	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7741398	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7741437	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs7742652	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7745097	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7752060	0.81[EUR][1000 genomes]
rs7752522	0.81[EUR][1000 genomes]
rs7755926	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7755982	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs7756009	0.83[EUR][1000 genomes]
rs7756405	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs7758082	0.82[EUR][1000 genomes]
rs7759128	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7759227	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7763224	0.83[EUR][1000 genomes]
rs7763987	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7771778	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7774697	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap]
rs7776219	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs912716	0.83[EUR][1000 genomes]
rs9296127	0.83[EUR][1000 genomes]
rs9296129	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap]
rs9348950	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357181	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9366863	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9368830	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9368832	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9380454	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380455	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs9462006	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462009	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462010	0.82[EUR][1000 genomes]
rs9462011	0.82[EUR][1000 genomes]
rs9462015	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs9462020	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9462021	0.82[EUR][1000 genomes]
rs9462022	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap];0.80[EUR][1000 genomes]
rs9462026	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs9469835	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9469857	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs9469859	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469862	0.83[EUR][1000 genomes]
rs9469863	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469870	0.84[EUR][1000 genomes]
rs9469871	0.84[EUR][1000 genomes]
rs9469872	0.83[EUR][1000 genomes]
rs9469879	0.80[EUR][1000 genomes]
rs9469882	0.82[EUR][1000 genomes]
rs9469883	0.82[EUR][1000 genomes]
rs9469884	0.81[EUR][1000 genomes]
rs9469885	0.82[EUR][1000 genomes]
rs9469886	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap]
rs9469887	0.81[EUR][1000 genomes]
rs9469891	0.80[EUR][1000 genomes]
rs9469909	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap]
rs9469914	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.80[YRI][hapmap]
rs9469917	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs9689516	0.81[EUR][1000 genomes]
rs9689820	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs998278	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830640	chr6:34542489-34714677	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv885794	chr6:34561585-34673149	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
13	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs2395598	UHRF1BP1	cis	Nerve Tibial	GTEx
rs2395598	UHRF1BP1	cis	Stomach	GTEx
rs2395598	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs2395598	UHRF1BP1	cis	Whole Blood	GTEx
rs2395598	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs2395598	C6orf107	cis	uninvolved skin	skin_eQTL
rs2395598	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs2395598	UHRF1BP1	cis	Artery Aorta	GTEx
rs2395598	UHRF1BP1	cis	lung	GTEx
rs2395598	UHRF1BP1	cis	Artery Tibial	GTEx
rs2395598	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs2395598	SNRPC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34626000-34647600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:34626000-34662000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:34626800-34641600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:34626800-34662400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:34628000-34641400	Weak transcription	Gastric	stomach
6	chr6:34632600-34647400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:34632800-34655200	Weak transcription	Fetal Stomach	stomach
8	chr6:34633000-34662800	Weak transcription	Aorta	Aorta
9	chr6:34633200-34641200	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:34633400-34641400	Weak transcription	Ovary	ovary
11	chr6:34634400-34641400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:34634800-34663200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:34635800-34641200	Enhancers	HepG2	liver
14	chr6:34635800-34647400	Weak transcription	Brain Angular Gyrus	brain
15	chr6:34636200-34640800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:34636400-34662200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:34638200-34642200	Enhancers	Liver	Liver
18	chr6:34638400-34642400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:34638600-34644200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:34638800-34640800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr6:34638800-34641800	Enhancers	NHLF	lung
22	chr6:34638800-34642800	Enhancers	Adipose Nuclei	Adipose
23	chr6:34638800-34643000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:34639000-34641600	Enhancers	Small Intestine	intestine
25	chr6:34639000-34642400	Enhancers	NHDF-Ad	bronchial
26	chr6:34639000-34643000	Enhancers	Fetal Thymus	thymus
27	chr6:34639000-34643200	Enhancers	Fetal Intestine Large	intestine
28	chr6:34639200-34641400	Enhancers	A549	lung
29	chr6:34639200-34641600	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr6:34639400-34640800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr6:34639400-34640800	Enhancers	Fetal Muscle Leg	muscle
32	chr6:34639400-34641200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:34639400-34641400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:34639400-34641400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr6:34639400-34641600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr6:34639400-34641600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr6:34639400-34641600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:34639400-34642400	Enhancers	HUVEC	blood vessel
39	chr6:34639400-34643000	Enhancers	Duodenum Mucosa	Duodenum
40	chr6:34639400-34643000	Enhancers	Stomach Mucosa	stomach
41	chr6:34639400-34643600	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr6:34639600-34641400	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr6:34639600-34641400	Weak transcription	Right Ventricle	heart
44	chr6:34639600-34641600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:34639600-34643000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:34639800-34640800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:34639800-34641000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:34639800-34641000	Weak transcription	Brain Anterior Caudate	brain
49	chr6:34639800-34641200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:34639800-34642200	Enhancers	Thymus	Thymus

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