Variant report

Variant	rs6940395
Chromosome Location	chr6:34736553-34736554
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34727618..34732287-chr6:34732833..34737608,8	K562	blood:
2	chr6:34604156..34606988-chr6:34735347..34736986,2	K562	blood:
3	chr6:34735510..34738429-chr6:34758057..34759743,2	MCF-7	breast:
4	chr6:34736115..34738612-chr6:34739380..34741719,2	MCF-7	breast:
5	chr6:34726193..34732287-chr6:34732320..34736678,10	K562	blood:

Extended variants
information (count: 219 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:204)

rs_ID	r²[population]
rs10807141	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10947531	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10947532	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1125340	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1125341	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11754574	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11755393	0.82[AMR][1000 genomes]
rs11755420	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11757370	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759151	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11965761	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12177835	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12201281	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13198620	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13215181	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13219589	0.84[EUR][1000 genomes]
rs13220394	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1543558	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1543559	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1886574	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1998702	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2038839	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2038840	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2038841	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296360	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2395598	0.81[EUR][1000 genomes]
rs2395599	0.81[EUR][1000 genomes]
rs2395604	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2395606	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2477507	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2477508	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2492860	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2492861	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2744941	0.80[EUR][1000 genomes]
rs2744943	0.81[EUR][1000 genomes]
rs2744944	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2744949	0.80[EUR][1000 genomes]
rs2744959	0.80[EUR][1000 genomes]
rs2744961	0.83[EUR][1000 genomes]
rs2764197	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2764198	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2764201	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2764206	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2764207	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2764208	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2764210	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2764211	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814945	0.81[EUR][1000 genomes]
rs2814947	0.87[EUR][1000 genomes]
rs2814949	0.81[EUR][1000 genomes]
rs2814951	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2814952	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814953	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2814955	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2814956	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814957	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814958	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814959	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814961	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2814963	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814966	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814967	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2814968	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2814969	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814970	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2814991	0.80[EUR][1000 genomes]
rs2815001	0.80[EUR][1000 genomes]
rs2815004	0.80[EUR][1000 genomes]
rs28675115	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34141614	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34493158	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34657938	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3734264	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3734268	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3777752	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798348	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798352	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4259246	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4282407	0.85[EUR][1000 genomes]
rs4513788	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4601124	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4624858	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58671447	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58843872	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59162539	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6457787	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6457788	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457789	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6457791	0.87[AMR][1000 genomes]
rs6457795	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66506671	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6899938	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6900188	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6900847	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6905393	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6906129	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6906759	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6907244	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6912327	0.83[ASN][1000 genomes]
rs6919654	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6921363	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6924898	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6925623	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6925764	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6929567	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930036	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6937132	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6937314	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6937784	0.81[EUR][1000 genomes]
rs6939600	0.82[AMR][1000 genomes]
rs6942040	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71538266	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71556966	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7341253	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7341267	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7341329	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739003	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7739766	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7739771	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7741398	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7741437	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7742652	0.92[EUR][1000 genomes]
rs7745097	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7748203	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7752060	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7752390	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7752522	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7755926	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7755982	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7756009	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7756405	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7756949	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7758082	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7759128	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7759227	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7762644	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7763224	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7763987	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7768189	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7768759	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7769820	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7769961	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7771778	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7774697	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7776219	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs912716	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296127	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9296129	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9348950	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357181	0.92[EUR][1000 genomes]
rs9366863	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368830	0.84[EUR][1000 genomes]
rs9368832	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380454	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9394248	0.81[EUR][1000 genomes]
rs9462006	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462009	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462010	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9462011	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462015	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9462018	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9462019	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9462020	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462021	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9462022	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9462023	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462024	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9462026	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9462028	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462030	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469856	0.85[AMR][1000 genomes]
rs9469857	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9469858	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469859	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469861	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469862	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9469863	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469866	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469869	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469870	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469871	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9469872	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9469878	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469879	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469880	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9469882	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469883	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469884	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469885	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469887	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469889	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469891	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469892	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469893	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9469894	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9469899	0.80[EUR][1000 genomes]
rs9469902	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9469905	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9469909	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9469914	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469917	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9689516	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9689820	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs998278	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs6940395	UHRF1BP1	cis	lung	GTEx
rs6940395	UHRF1BP1	cis	Nerve Tibial	GTEx
rs6940395	UHRF1BP1	cis	Artery Aorta	GTEx
rs6940395	UHRF1BP1	cis	Artery Tibial	GTEx
rs6940395	C6orf107	Cis_1M	lymphoblastoid	RTeQTL
rs6940395	UHRF1BP1	cis	Esophagus Muscularis	GTEx
rs6940395	UHRF1BP1	cis	Whole Blood	GTEx
rs6940395	UHRF1BP1	cis	Stomach	GTEx
rs6940395	UHRF1BP1	cis	Muscle Skeletal	GTEx
rs6940395	UHRF1BP1	cis	Adipose Subcutaneous	GTEx
rs6940395	SNRPC	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:34726200-34738000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:34726200-34739600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:34726400-34739200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:34726400-34739800	Weak transcription	Stomach Mucosa	stomach
7	chr6:34726800-34747800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:34727000-34739200	Strong transcription	Fetal Stomach	stomach
9	chr6:34727000-34740200	Strong transcription	Fetal Muscle Leg	muscle
10	chr6:34727000-34743400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:34727000-34743800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:34727000-34744000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:34727000-34744200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:34727000-34745200	Strong transcription	Fetal Thymus	thymus
15	chr6:34727200-34739600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:34727200-34743800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:34727200-34743800	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:34727200-34746600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:34727400-34745200	Strong transcription	Fetal Intestine Large	intestine
20	chr6:34727600-34738400	Strong transcription	Fetal Intestine Small	intestine
21	chr6:34727600-34739000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:34727800-34744800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:34727800-34745200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:34728400-34743200	Strong transcription	Brain Germinal Matrix	brain
25	chr6:34728400-34744400	Strong transcription	Dnd41	blood
26	chr6:34728600-34743800	Strong transcription	Liver	Liver
27	chr6:34728600-34748400	Weak transcription	Fetal Heart	heart
28	chr6:34728800-34738600	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr6:34728800-34745400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr6:34729000-34738000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:34729000-34738600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:34729000-34739200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:34729200-34741400	Strong transcription	Ovary	ovary
34	chr6:34729400-34743600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:34729400-34744600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:34729600-34739000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:34729600-34743200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:34729600-34743200	Strong transcription	Placenta	Placenta
39	chr6:34729600-34743200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:34729600-34743600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr6:34729600-34743800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:34729600-34743800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr6:34729600-34743800	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr6:34729600-34744400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:34729600-34745000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:34729800-34738000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:34729800-34739000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:34729800-34739200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:34729800-34739200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:34729800-34739400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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