Variant report

Variant	rs6550945
Chromosome Location	chr3:25125408-25125409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1574901	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1580817	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1587428	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1587429	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1587430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604007	0.85[EUR][1000 genomes]
rs2036270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2062487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858698	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858702	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4858703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6419850	0.92[EUR][1000 genomes]
rs6550943	0.86[EUR][1000 genomes]
rs6550948	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6766372	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6775433	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6777955	0.85[EUR][1000 genomes]
rs7430038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9310770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9809916	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9831718	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs988268	0.86[EUR][1000 genomes]
rs994267	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25117000-25127800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:25125400-25125800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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