Variant report

Variant	rs6777955
Chromosome Location	chr3:25109802-25109803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13064047	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13067187	0.87[EUR][1000 genomes]
rs1574901	0.93[EUR][1000 genomes]
rs1587428	0.81[EUR][1000 genomes]
rs1587429	0.85[EUR][1000 genomes]
rs1587430	0.85[EUR][1000 genomes]
rs1604007	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17015670	0.90[EUR][1000 genomes]
rs2036270	0.85[EUR][1000 genomes]
rs2062487	0.85[EUR][1000 genomes]
rs4444672	0.85[EUR][1000 genomes]
rs4484159	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4858698	0.85[EUR][1000 genomes]
rs4858702	0.85[EUR][1000 genomes]
rs4858703	0.85[EUR][1000 genomes]
rs6419850	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6550943	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6550945	0.85[EUR][1000 genomes]
rs6550948	0.84[EUR][1000 genomes]
rs6766372	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6775433	0.92[EUR][1000 genomes]
rs6777624	0.88[EUR][1000 genomes]
rs7430038	0.85[EUR][1000 genomes]
rs9310770	0.85[EUR][1000 genomes]
rs9809401	0.89[EUR][1000 genomes]
rs9809916	0.84[EUR][1000 genomes]
rs9831718	0.85[EUR][1000 genomes]
rs9866836	0.89[EUR][1000 genomes]
rs9882518	0.85[EUR][1000 genomes]
rs988268	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs994267	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25099800-25111200	Weak transcription	Fetal Lung	lung
2	chr3:25104600-25112200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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