Variant report

Variant	rs4484159
Chromosome Location	chr3:25087777-25087778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13064047	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13067187	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1574901	0.84[EUR][1000 genomes]
rs1604007	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17015670	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6419850	0.84[EUR][1000 genomes]
rs6550943	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6766372	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6775433	0.83[EUR][1000 genomes]
rs6777624	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6777955	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9809401	0.96[EUR][1000 genomes]
rs9866836	0.96[EUR][1000 genomes]
rs988268	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs994267	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25079400-25088400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:25080000-25089000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:25083400-25087800	Enhancers	Fetal Heart	heart
4	chr3:25085600-25088200	Enhancers	Fetal Stomach	stomach
5	chr3:25085800-25088400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:25086000-25087800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:25086000-25087800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:25086200-25087800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:25086400-25087800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:25086400-25087800	Enhancers	Fetal Lung	lung
11	chr3:25086600-25087800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:25086600-25087800	Enhancers	Fetal Muscle Leg	muscle
13	chr3:25086600-25087800	Enhancers	Right Atrium	heart
14	chr3:25086600-25088200	Enhancers	Left Ventricle	heart
15	chr3:25086600-25088600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:25086800-25088400	Weak transcription	Fetal Intestine Small	intestine
17	chr3:25086800-25089000	Weak transcription	Right Ventricle	heart
18	chr3:25087000-25087800	Enhancers	Brain Cingulate Gyrus	brain
19	chr3:25087000-25088000	Enhancers	Brain Anterior Caudate	brain
20	chr3:25087000-25089400	Enhancers	Brain Substantia Nigra	brain
21	chr3:25087000-25092600	Weak transcription	Fetal Kidney	kidney
22	chr3:25087200-25088400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:25087200-25088600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:25087400-25089200	Enhancers	Brain Hippocampus Middle	brain
25	chr3:25087600-25087800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:25087600-25087800	Enhancers	Ovary	ovary
27	chr3:25087600-25088800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:25087600-25088800	Weak transcription	Brain Angular Gyrus	brain

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