Variant report

Variant	rs17015670
Chromosome Location	chr3:25086152-25086153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25079124..25081667-chr3:25084641..25087586,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13064047	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13067187	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1574901	0.83[EUR][1000 genomes]
rs1604007	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4484159	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6419850	0.83[EUR][1000 genomes]
rs6550943	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6766372	0.89[EUR][1000 genomes]
rs6775433	0.83[EUR][1000 genomes]
rs6777624	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6777955	0.90[EUR][1000 genomes]
rs9809401	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9866836	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs988268	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs994267	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25070000-25086600	Weak transcription	Left Ventricle	heart
2	chr3:25075200-25086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25079200-25086600	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:25079400-25086800	Weak transcription	Aorta	Aorta
5	chr3:25079400-25088400	Weak transcription	Adipose Nuclei	Adipose
6	chr3:25080000-25089000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:25080600-25086600	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:25080800-25086600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:25080800-25086600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:25083400-25087800	Enhancers	Fetal Heart	heart
11	chr3:25084600-25086400	Weak transcription	Right Ventricle	heart
12	chr3:25084600-25086600	Weak transcription	Right Atrium	heart
13	chr3:25085600-25086400	Enhancers	Brain Hippocampus Middle	brain
14	chr3:25085600-25086600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:25085600-25088200	Enhancers	Fetal Stomach	stomach
16	chr3:25085800-25086400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:25085800-25088400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:25086000-25086400	Weak transcription	Fetal Lung	lung
19	chr3:25086000-25086600	Enhancers	Brain Anterior Caudate	brain
20	chr3:25086000-25086600	Enhancers	Brain Substantia Nigra	brain
21	chr3:25086000-25087600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:25086000-25087600	Enhancers	Stomach Smooth Muscle	stomach
23	chr3:25086000-25087800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:25086000-25087800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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