Variant report

Variant	rs13064047
Chromosome Location	chr3:25082088-25082089
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13067187	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1574901	0.82[EUR][1000 genomes]
rs1604007	0.90[EUR][1000 genomes]
rs17015670	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4484159	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6419850	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6550943	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6766372	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6775433	0.81[EUR][1000 genomes]
rs6777624	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6777955	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9809401	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9866836	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs988268	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs994267	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25070000-25086600	Weak transcription	Left Ventricle	heart
2	chr3:25074200-25083400	Weak transcription	Right Atrium	heart
3	chr3:25075200-25086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:25079200-25086600	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:25079400-25083400	Weak transcription	Fetal Heart	heart
6	chr3:25079400-25086800	Weak transcription	Aorta	Aorta
7	chr3:25079400-25088400	Weak transcription	Adipose Nuclei	Adipose
8	chr3:25080000-25089000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:25080600-25086600	Weak transcription	Colon Smooth Muscle	Colon
10	chr3:25080800-25085200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:25080800-25086600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:25080800-25086600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:25081000-25082200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:25081000-25083600	Weak transcription	Fetal Lung	lung
15	chr3:25081000-25085600	Weak transcription	Fetal Stomach	stomach
16	chr3:25081000-25086000	Weak transcription	Brain Anterior Caudate	brain
17	chr3:25081400-25083800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:25081400-25084000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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