Variant report

Variant	rs6766372
Chromosome Location	chr3:25111472-25111473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:25105659..25107199-chr3:25110702..25113407,2	K562	blood:
2	chr3:25109117..25112751-chr3:25632559..25635347,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13064047	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13067187	0.86[EUR][1000 genomes]
rs1574901	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1580817	0.81[EUR][1000 genomes]
rs1587428	0.84[EUR][1000 genomes]
rs1587429	0.88[EUR][1000 genomes]
rs1587430	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1604007	0.97[EUR][1000 genomes]
rs17015670	0.89[EUR][1000 genomes]
rs2036270	0.88[EUR][1000 genomes]
rs2062487	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4444672	0.88[EUR][1000 genomes]
rs4484159	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4858698	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858702	0.88[EUR][1000 genomes]
rs4858703	0.88[EUR][1000 genomes]
rs6419850	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6550943	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6550945	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6550948	0.85[EUR][1000 genomes]
rs6775433	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6777624	0.87[EUR][1000 genomes]
rs6777955	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7430038	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9310770	0.88[EUR][1000 genomes]
rs9809401	0.86[EUR][1000 genomes]
rs9809916	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9831718	0.88[EUR][1000 genomes]
rs9866836	0.86[EUR][1000 genomes]
rs9882518	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs988268	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs994267	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834644	chr3:24936987-25112610	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv589955	chr3:24987823-25113358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25104600-25112200	Weak transcription	Pancreas	Pancrea
2	chr3:25111200-25111800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:25111200-25112000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:25111400-25111800	Active TSS	Colon Smooth Muscle	Colon
5	chr3:25111400-25115600	Weak transcription	Fetal Lung	lung

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