Variant report

Variant	rs6565217
Chromosome Location	chr16:31083324-31083325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr16:31083189-31083494	Hela-S3	cervix:	n/a	n/a
2	FOS	chr16:31083195-31083511	MCF10A-Er-Src	breast:	n/a	n/a
3	JUND	chr16:31082939-31086437	SK-N-SH	brain:	n/a	chr16:31085077-31085086 chr16:31084994-31085004 chr16:31083087-31083096 chr16:31084994-31085004 chr16:31084844-31084853
4	POLR2A	chr16:31083192-31083575	GM12892	blood:	n/a	n/a
5	JUND	chr16:31082750-31085035	GM12878	blood:	n/a	chr16:31084994-31085004 chr16:31083087-31083096 chr16:31084994-31085004 chr16:31084844-31084853
6	JUND	chr16:31083135-31083514	HepG2	liver:	n/a	n/a
7	ATF1	chr16:31083162-31083565	K562	blood:	n/a	n/a
8	STAT3	chr16:31083216-31083498	MCF10A-Er-Src	breast:	n/a	n/a
9	MAZ	chr16:31082958-31086517	IMR90	lung:	n/a	chr16:31084485-31084493
10	RCOR1	chr16:31082910-31086712	IMR90	lung:	n/a	n/a
11	STAT3	chr16:31083322-31083476	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr16:31083145-31083569	SK-N-SH	brain:	n/a	n/a
13	MAFK	chr16:31083225-31083554	IMR90	lung:	n/a	n/a
14	RAD21	chr16:31083259-31086477	IMR90	lung:	n/a	chr16:31085071-31085085 chr16:31085073-31085086
15	POLR2A	chr16:31083114-31086598	IMR90	lung:	n/a	n/a
16	CREB1	chr16:31083113-31083607	GM12878	blood:	n/a	n/a
17	CEBPB	chr16:31083206-31083972	IMR90	lung:	n/a	n/a
18	MXI1	chr16:31082840-31086626	IMR90	lung:	n/a	n/a
19	JUN	chr16:31083143-31083511	HepG2	liver:	n/a	chr16:31083315-31083328
20	STAT3	chr16:31083252-31083468	MCF10A-Er-Src	breast:	n/a	n/a
21	JUND	chr16:31083150-31083541	Hela-S3	cervix:	n/a	n/a
22	BATF	chr16:31083063-31083380	GM12878	blood:	n/a	chr16:31083212-31083223
23	JUND	chr16:31083121-31083524	K562	blood:	n/a	n/a
24	POLR2A	chr16:31083021-31083584	GM12878	blood:	n/a	n/a
25	FOS	chr16:31083242-31083455	MCF10A-Er-Src	breast:	n/a	n/a
26	WRNIP1	chr16:31083147-31086367	GM12878	blood:	n/a	n/a
27	POLR2A	chr16:31083167-31086523	GM12892	blood:	n/a	n/a

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30993751..31000588-chr16:31082470..31087271,14	MCF-7	breast:
2	chr16:31083053..31086141-chr16:31468278..31470995,4	MCF-7	breast:
3	chr16:30967393..30971385-chr16:31083259..31086232,6	K562	blood:
4	chr16:31083053..31084601-chr16:31201158..31202703,2	MCF-7	breast:
5	chr16:31083048..31086004-chr16:31194000..31195518,2	K562	blood:
6	chr16:31082536..31087626-chr16:31189682..31193300,10	K562	blood:
7	chr16:31082772..31088721-chr16:31466605..31471958,8	MCF-7	breast:
8	chr16:30967179..30972282-chr16:31082507..31088894,13	MCF-7	breast:
9	chr16:31083121..31087142-chr16:31201423..31205329,4	K562	blood:
10	chr16:31043716..31047464-chr16:31083118..31086519,10	MCF-7	breast:
11	chr16:31082869..31088846-chr16:31189629..31192848,9	MCF-7	breast:
12	chr16:31082745..31087235-chr16:31149717..31155170,6	K562	blood:
13	chr16:31006807..31011358-chr16:31082999..31086095,12	MCF-7	breast:
14	chr16:31072499..31076258-chr16:31082404..31085688,4	K562	blood:
15	chr16:31043013..31046253-chr16:31082389..31087326,7	K562	blood:
16	chr16:31083033..31088054-chr16:31143674..31155673,17	MCF-7	breast:
17	chr16:31076302..31081402-chr16:31082512..31087316,9	K562	blood:
18	chr16:31043013..31047219-chr16:31082783..31087326,13	K562	blood:
19	chr16:31082041..31086874-chr16:31152182..31155388,6	MCF-7	breast:
20	chr16:31083069..31087057-chr16:31126898..31130730,7	K562	blood:
21	chr16:31082242..31083772-chr16:31127468..31130387,2	MCF-7	breast:
22	chr16:31043007..31053782-chr16:31072765..31087431,40	MCF-7	breast:
23	chr16:31082583..31087626-chr16:31190328..31193369,8	K562	blood:
24	chr16:30991043..31010547-chr16:31082350..31088728,42	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF646	TF binding region
ENSG00000260267	Chromatin interaction
ENSG00000167394	Chromatin interaction
ENSG00000261124	Chromatin interaction
ENSG00000103496	Chromatin interaction
ENSG00000178226	Chromatin interaction
ENSG00000099381	Chromatin interaction
ENSG00000052344	Chromatin interaction
ENSG00000099365	Chromatin interaction
ENSG00000268863	Chromatin interaction
ENSG00000099377	Chromatin interaction
ENSG00000140691	Chromatin interaction
ENSG00000260304	Chromatin interaction
ENSG00000232748	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000103510	Chromatin interaction
ENSG00000262766	Chromatin interaction

Extended variants
information (count: 156 )
Associated
traits (count: 21 )

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1046276	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs1060506	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs10782001	0.89[JPT][hapmap]
rs10782002	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs10871454	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11076	0.88[JPT][hapmap]
rs1108431	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11150599	0.88[JPT][hapmap]
rs11150600	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs11150601	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs11150604	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11640534	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs11640767	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11640957	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11640961	0.89[JPT][hapmap]
rs11642003	0.82[ASN][1000 genomes]
rs11642192	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11647284	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11647442	0.95[ASN][1000 genomes]
rs11649653	1.00[JPT][hapmap]
rs11862744	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11864806	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864839	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865038	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865499	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[ASN][1000 genomes]
rs12102776	0.82[CHB][hapmap];0.92[CHD][hapmap]
rs12445568	0.83[CEU][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap]
rs12445650	0.92[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12448321	0.89[ASN][1000 genomes]
rs12597511	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12716981	0.95[ASN][1000 genomes]
rs12716982	0.95[ASN][1000 genomes]
rs12924903	0.88[GIH][hapmap];1.00[JPT][hapmap]
rs12926295	0.88[JPT][hapmap]
rs12928852	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs12930545	0.88[GIH][hapmap]
rs12931046	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs12934418	0.89[ASN][1000 genomes]
rs13708	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs14235	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1458201	0.89[JPT][hapmap]
rs1458202	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs1549293	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17839567	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17839568	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870293	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs1978485	0.95[ASN][1000 genomes]
rs1978487	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2032915	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2054213	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs2288004	0.89[ASN][1000 genomes]
rs2303222	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2303223	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2305880	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs2305884	0.83[CEU][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap]
rs2359612	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2855475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28725459	0.91[ASN][1000 genomes]
rs28814987	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884738	0.95[ASN][1000 genomes]
rs34649473	0.85[ASN][1000 genomes]
rs35351013	0.93[ASN][1000 genomes]
rs35468353	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35675346	1.00[JPT][hapmap]
rs35713203	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35961830	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3751855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813020	0.88[GIH][hapmap]
rs4468641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527034	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4889525	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs4889526	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4889530	0.87[ASN][1000 genomes]
rs4889599	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs4889603	0.89[JPT][hapmap]
rs4889604	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs4889606	0.89[JPT][hapmap]
rs4889609	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[MKK][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4889619	0.84[ASN][1000 genomes]
rs4889620	0.95[ASN][1000 genomes]
rs4889623	0.82[CHB][hapmap]
rs4889651	0.88[JPT][hapmap]
rs4889653	0.88[JPT][hapmap]
rs55766044	0.95[ASN][1000 genomes]
rs55979739	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56284083	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56314408	0.95[ASN][1000 genomes]
rs56813533	0.93[ASN][1000 genomes]
rs57434408	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57576577	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58726213	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59061704	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59735493	0.95[ASN][1000 genomes]
rs60996860	0.91[ASN][1000 genomes]
rs61162043	1.00[ASN][1000 genomes]
rs61320757	0.95[ASN][1000 genomes]
rs6950	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs7184567	0.92[CEU][hapmap]
rs7187995	0.93[ASN][1000 genomes]
rs7190802	0.82[CHB][hapmap]
rs7196161	1.00[ASN][1000 genomes]
rs7196726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197717	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200879	1.00[JPT][hapmap]
rs7203999	0.83[CEU][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap]
rs7204459	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs7206511	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs7294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729482	0.83[CEU][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs732172	0.92[CEU][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs732173	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73530203	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs749670	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs749671	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs749767	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7500176	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs750952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046707	0.89[JPT][hapmap]
rs8047803	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8050588	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs8050894	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8056842	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8060857	0.88[GIH][hapmap];0.89[JPT][hapmap]
rs8061047	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8062719	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs8063565	0.88[JPT][hapmap]
rs881929	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs889548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs889555	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs897986	0.83[CEU][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap]
rs9673641	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9923231	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9925964	0.95[ASN][1000 genomes]
rs9926533	0.82[CHD][hapmap];0.89[JPT][hapmap]
rs9929899	0.86[ASN][1000 genomes]
rs9933843	0.88[JPT][hapmap]
rs9934438	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9936329	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9938550	0.83[CEU][hapmap];0.88[GIH][hapmap]
rs9939417	1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9939558	0.89[ASN][1000 genomes]
rs9972727	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
4	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
5	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
6	nsv905734	chr16:30877544-31191482	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
7	nsv905735	chr16:30890538-31247924	Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	264 gene(s)	inside rSNPs	diseases
8	nsv457483	chr16:30903679-31191482	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
9	nsv571820	chr16:30903679-31191482	Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	253 gene(s)	inside rSNPs	diseases
10	esv1797877	chr16:30948643-31188432	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
11	nsv833193	chr16:30960796-31133604	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
12	nsv905740	chr16:31066249-31232437	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases
13	nsv905741	chr16:31066249-31247924	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	202 gene(s)	inside rSNPs	diseases

mRNA abundance (count:21)

SNP	Gene	Cis/trans	Tissue	Source
rs6565217	RP11-196G11.2	cis	Esophagus Muscularis	GTEx
rs6565217	HSD3B7	cis	Skin Sun Exposed Lower leg	GTEx
rs6565217	ZNF747	cis	parietal	SCAN
rs6565217	MYST1	cis	parietal	SCAN
rs6565217	ZNF785	cis	lymphoblastoid	seeQTL
rs6565217	HSD3B7	cis	Esophagus Mucosa	GTEx
rs6565217	STX4	Cis_1M	lymphoblastoid	RTeQTL
rs6565217	RP11-196G11.2	cis	Muscle Skeletal	GTEx
rs6565217	VKORC1	cis	cerebellum	SCAN
rs6565217	KAT8	cis	Skin Sun Exposed Lower leg	GTEx
rs6565217	TAOK2	cis	parietal	SCAN
rs6565217	ZNF668	cis	multi-tissue	Pritchard
rs6565217	STX1B	cis	Thyroid	GTEx
rs6565217	ZNF48	cis	cerebellum	SCAN
rs6565217	MYST1	cis	cerebellum	SCAN
rs6565217	MYST1	cis	lymphoblastoid	seeQTL
rs6565217	YPEL3	cis	parietal	SCAN
rs6565217	RABEP2	cis	cerebellum	SCAN
rs6565217	MYST1	Cis_1M	lymphoblastoid	RTeQTL
rs6565217	NCRNA00095	cis	cerebellum	SCAN
rs6565217	HSD3B7	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31052000-31083400	Weak transcription	Primary B cells from cord blood	blood
2	chr16:31073800-31083400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr16:31075400-31084000	Weak transcription	Ovary	ovary
4	chr16:31075600-31083400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:31075600-31083600	Weak transcription	Gastric	stomach
6	chr16:31075600-31083800	Weak transcription	Aorta	Aorta
7	chr16:31075800-31083400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:31075800-31083400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:31075800-31083400	Weak transcription	Fetal Intestine Large	intestine
10	chr16:31076800-31083400	Weak transcription	Left Ventricle	heart
11	chr16:31077400-31083600	Weak transcription	Lung	lung
12	chr16:31077800-31083400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr16:31080800-31083400	Weak transcription	Pancreas	Pancrea
14	chr16:31082000-31083600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr16:31082200-31083400	Enhancers	Fetal Muscle Trunk	muscle
16	chr16:31082400-31083400	Enhancers	Fetal Muscle Leg	muscle
17	chr16:31082600-31083400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr16:31082600-31083600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:31082800-31083400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr16:31082800-31083400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr16:31082800-31083400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr16:31082800-31083400	Enhancers	Psoas Muscle	Psoas
23	chr16:31082800-31083400	Enhancers	HUVEC	blood vessel
24	chr16:31082800-31083600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr16:31082800-31083800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr16:31082800-31083800	Flanking Active TSS	NHLF	lung
27	chr16:31082800-31084000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:31082800-31084000	Flanking Active TSS	Fetal Brain Female	brain
29	chr16:31083000-31083400	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr16:31083000-31083400	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr16:31083000-31083400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:31083000-31083400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr16:31083000-31083400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:31083000-31083400	Enhancers	Brain Hippocampus Middle	brain
35	chr16:31083000-31083400	Enhancers	Fetal Stomach	stomach
36	chr16:31083000-31083400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr16:31083000-31083600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:31083000-31083600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr16:31083000-31083600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr16:31083000-31083600	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr16:31083000-31083600	Flanking Active TSS	GM12878-XiMat	blood
42	chr16:31083000-31083800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr16:31083000-31083800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr16:31083000-31083800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr16:31083000-31083800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr16:31083000-31083800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:31083000-31083800	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr16:31083000-31083800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr16:31083000-31083800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr16:31083000-31083800	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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