Variant report
Variant | rs9923231 |
---|---|
Chromosome Location | chr16:31107689-31107690 |
allele | A/C/G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:15)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
No data |
(count:15 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:31100541..31103210-chr16:31106275..31107775,2 | K562 | blood: | |
2 | chr16:31104440..31108567-chr16:31128079..31131886,5 | MCF-7 | breast: | |
3 | chr16:31103018..31109714-chr16:31190079..31193155,12 | K562 | blood: | |
4 | chr16:31104719..31108663-chr16:31190189..31193568,7 | MCF-7 | breast: | |
5 | chr16:31103889..31108377-chr16:31189247..31192858,8 | MCF-7 | breast: | |
6 | chr16:30995825..30999208-chr16:31104283..31108641,3 | MCF-7 | breast: | |
7 | chr16:30993478..30998928-chr16:31103966..31108613,11 | MCF-7 | breast: | |
8 | chr16:31043723..31046982-chr16:31104763..31108455,4 | MCF-7 | breast: | |
9 | chr16:31104992..31108435-chr16:31119873..31122866,3 | K562 | blood: | |
10 | chr16:30996102..30996887-chr16:31107248..31107856,2 | K562 | blood: | |
11 | chr16:30995993..30997579-chr16:31106860..31107810,10 | MCF-7 | breast: | |
12 | chr16:31103018..31108579-chr16:31189579..31192896,9 | K562 | blood: | |
13 | chr16:31104528..31108651-chr16:31117626..31121071,4 | MCF-7 | breast: | |
14 | chr16:30968251..30971465-chr16:31104162..31108928,5 | MCF-7 | breast: | |
15 | chr16:31105355..31107694-chr16:31153094..31155338,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
VKORC1 | TF binding region |
ENSG00000255439 | TF binding region |
ENSG00000103507 | Chromatin interaction |
ENSG00000252809 | Chromatin interaction |
ENSG00000262766 | Chromatin interaction |
ENSG00000268863 | Chromatin interaction |
ENSG00000099377 | Chromatin interaction |
ENSG00000103510 | Chromatin interaction |
ENSG00000099381 | Chromatin interaction |
ENSG00000103496 | Chromatin interaction |
ENSG00000178226 | Chromatin interaction |
ENSG00000151006 | Chromatin interaction |
ENSG00000089280 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1046276 | 1.00[JPT][hapmap] |
rs1060506 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs10782001 | 0.89[JPT][hapmap] |
rs10782002 | 0.89[JPT][hapmap] |
rs10871454 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs11076 | 0.88[JPT][hapmap] |
rs1108431 | 0.89[ASN][1000 genomes] |
rs11150600 | 0.89[JPT][hapmap] |
rs11150601 | 0.89[JPT][hapmap] |
rs11150604 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11640534 | 0.89[JPT][hapmap] |
rs11640767 | 0.86[ASN][1000 genomes] |
rs11640957 | 0.86[ASN][1000 genomes] |
rs11640961 | 0.87[CEU][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.88[TSI][hapmap] |
rs11642003 | 0.82[ASN][1000 genomes] |
rs11642192 | 0.98[ASN][1000 genomes] |
rs11647284 | 1.00[ASN][1000 genomes] |
rs11647442 | 0.95[ASN][1000 genomes] |
rs11649653 | 0.81[GIH][hapmap];1.00[JPT][hapmap] |
rs11862744 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs11864806 | 1.00[ASN][1000 genomes] |
rs11864839 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs11865038 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs11865499 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs12102776 | 0.82[CHB][hapmap];0.92[CHD][hapmap] |
rs12445650 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs12448321 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12597511 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12716981 | 0.95[ASN][1000 genomes] |
rs12716982 | 0.95[ASN][1000 genomes] |
rs12924903 | 1.00[JPT][hapmap] |
rs12928852 | 0.89[JPT][hapmap] |
rs12931046 | 0.89[JPT][hapmap] |
rs12934418 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13708 | 0.89[JPT][hapmap] |
rs14235 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1458201 | 0.89[JPT][hapmap] |
rs1458202 | 0.89[JPT][hapmap] |
rs1549293 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs17839567 | 0.89[ASN][1000 genomes] |
rs17839568 | 1.00[ASN][1000 genomes] |
rs17882368 | 0.81[LWK][hapmap];1.00[YRI][hapmap] |
rs1870293 | 0.89[JPT][hapmap] |
rs1978485 | 0.95[ASN][1000 genomes] |
rs1978487 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[ASN][1000 genomes] |
rs2032915 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2054213 | 0.89[JPT][hapmap] |
rs2288004 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2303222 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2303223 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2305880 | 0.89[JPT][hapmap] |
rs2305884 | 0.89[JPT][hapmap] |
rs2359612 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2855475 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs28725459 | 0.91[ASN][1000 genomes] |
rs28814987 | 1.00[ASN][1000 genomes] |
rs2884738 | 0.95[ASN][1000 genomes] |
rs34649473 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs34898535 | 0.88[EUR][1000 genomes] |
rs35351013 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs35468353 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs35675346 | 1.00[JPT][hapmap] |
rs35713203 | 1.00[ASN][1000 genomes] |
rs3751855 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs4468641 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs4527034 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4889525 | 0.89[JPT][hapmap] |
rs4889530 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs4889599 | 0.89[JPT][hapmap] |
rs4889603 | 0.84[CEU][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap] |
rs4889604 | 0.89[JPT][hapmap] |
rs4889606 | 0.96[CEU][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap] |
rs4889609 | 1.00[JPT][hapmap] |
rs4889619 | 0.84[ASN][1000 genomes] |
rs4889620 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4889623 | 0.82[CHB][hapmap] |
rs55766044 | 0.95[ASN][1000 genomes] |
rs55979739 | 0.89[ASN][1000 genomes] |
rs56284083 | 0.89[ASN][1000 genomes] |
rs56314408 | 0.95[ASN][1000 genomes] |
rs56813533 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs57434408 | 0.91[ASN][1000 genomes] |
rs58726213 | 0.87[ASN][1000 genomes] |
rs59061704 | 0.86[ASN][1000 genomes] |
rs59735493 | 0.95[ASN][1000 genomes] |
rs60996860 | 0.91[ASN][1000 genomes] |
rs61162043 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61320757 | 0.95[ASN][1000 genomes] |
rs6565217 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs6950 | 0.89[JPT][hapmap] |
rs7187995 | 0.93[ASN][1000 genomes] |
rs7190802 | 0.82[CHB][hapmap] |
rs7196161 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7196726 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs7197717 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs7199949 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs7200879 | 1.00[JPT][hapmap] |
rs7203999 | 0.82[CHD][hapmap];0.89[JPT][hapmap] |
rs7204459 | 0.89[JPT][hapmap] |
rs7206511 | 0.89[JPT][hapmap] |
rs7294 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs729482 | 1.00[JPT][hapmap] |
rs732172 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs732173 | 0.89[ASN][1000 genomes] |
rs73530203 | 0.98[ASN][1000 genomes] |
rs749670 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs749671 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs749767 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[ASN][1000 genomes] |
rs7500176 | 0.89[ASN][1000 genomes] |
rs750952 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs8046707 | 0.84[GIH][hapmap];0.89[JPT][hapmap] |
rs8047803 | 1.00[ASN][1000 genomes] |
rs8050588 | 0.89[JPT][hapmap] |
rs8050894 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8056842 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs8060857 | 0.89[JPT][hapmap] |
rs8061047 | 0.93[ASN][1000 genomes] |
rs8062719 | 0.89[JPT][hapmap] |
rs881929 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs889548 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs889555 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
rs897986 | 0.89[JPT][hapmap] |
rs9925964 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9926533 | 0.96[CEU][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap] |
rs9929899 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9934438 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9936329 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs9939417 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9939558 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9972727 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062456 | chr16:30442166-31253997 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 437 gene(s) | inside rSNPs | diseases |
2 | nsv542898 | chr16:30442166-31253997 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 437 gene(s) | inside rSNPs | diseases |
3 | nsv905729 | chr16:30642867-31247924 | Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 387 gene(s) | inside rSNPs | diseases |
4 | nsv431451 | chr16:30682399-31340999 | Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 350 gene(s) | inside rSNPs | diseases |
5 | nsv905734 | chr16:30877544-31191482 | Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 271 gene(s) | inside rSNPs | diseases |
6 | nsv905735 | chr16:30890538-31247924 | Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 264 gene(s) | inside rSNPs | diseases |
7 | nsv457483 | chr16:30903679-31191482 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 253 gene(s) | inside rSNPs | diseases |
8 | nsv571820 | chr16:30903679-31191482 | Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 253 gene(s) | inside rSNPs | diseases |
9 | esv1797877 | chr16:30948643-31188432 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 114 gene(s) | inside rSNPs | diseases |
10 | nsv833193 | chr16:30960796-31133604 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 109 gene(s) | inside rSNPs | diseases |
11 | nsv905740 | chr16:31066249-31232437 | Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 202 gene(s) | inside rSNPs | diseases |
12 | nsv905741 | chr16:31066249-31247924 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 202 gene(s) | inside rSNPs | diseases |
13 | nsv905742 | chr16:31102321-31247924 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 188 gene(s) | inside rSNPs | diseases |
Disease | PMID | Source |
---|---|---|
Warfarin maintenance dose | 19300499 | GWAS catalog |
Warfarin maintenance dose | 20833655 | GWAS catalog |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs9923231 | YPEL3 | cis | cerebellum | SCAN |
rs9923231 | ZNF668 | cis | cerebellum | SCAN |
rs9923231 | MYST1 | cis | parietal | SCAN |
rs9923231 | KAT8 | cis | Skin Sun Exposed Lower leg | GTEx |
rs9923231 | STX1B | cis | cerebellum | SCAN |
rs9923231 | ITGAX | cis | cerebellum | SCAN |
rs9923231 | NCRNA00095 | cis | cerebellum | SCAN |
rs9923231 | HSD3B7 | cis | Whole Blood | GTEx |
rs9923231 | RP11-196G11.2 | cis | Muscle Skeletal | GTEx |
rs9923231 | MYST1 | cis | cerebellum | SCAN |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:31106400-31107800 | Enhancers | Primary B cells from peripheral blood | blood |
2 | chr16:31106400-31107800 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
3 | chr16:31106400-31107800 | Enhancers | HepG2 | liver |
4 | chr16:31106400-31108000 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
5 | chr16:31106800-31107800 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
6 | chr16:31106800-31117200 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
7 | chr16:31107200-31108000 | Enhancers | GM12878-XiMat | blood |
8 | chr16:31107200-31108400 | Weak transcription | Esophagus | oesophagus |
9 | chr16:31107200-31111400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
10 | chr16:31107400-31108600 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
11 | chr16:31107400-31109400 | Weak transcription | Osteobl | bone |
12 | chr16:31107400-31111200 | Weak transcription | Muscle Satellite Cultured Cells | -- |
13 | chr16:31107400-31111200 | Weak transcription | K562 | blood |
14 | chr16:31107400-31111400 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
15 | chr16:31107400-31117200 | Weak transcription | NHLF | lung |
16 | chr16:31107600-31111600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |