Variant report

Variant	rs656636
Chromosome Location	chr11:105745977-105745978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2847179	0.86[AFR][1000 genomes]
rs473281	0.86[AFR][1000 genomes]
rs481203	0.86[AFR][1000 genomes]
rs517287	0.86[AFR][1000 genomes]
rs530279	0.87[AFR][1000 genomes]
rs539216	0.86[AFR][1000 genomes]
rs558324	0.86[AFR][1000 genomes]
rs584783	0.86[AFR][1000 genomes]
rs590908	0.86[AFR][1000 genomes]
rs592759	0.86[AFR][1000 genomes]
rs611278	0.86[AFR][1000 genomes]
rs628230	0.86[AFR][1000 genomes]
rs630885	0.86[AFR][1000 genomes]
rs632549	0.86[AFR][1000 genomes]
rs638554	0.86[AFR][1000 genomes]
rs648155	0.86[AFR][1000 genomes]
rs659654	0.86[AFR][1000 genomes]
rs668564	0.86[AFR][1000 genomes]
rs674921	0.87[AFR][1000 genomes]
rs680049	0.86[AFR][1000 genomes]
rs688863	0.87[AFR][1000 genomes]
rs694854	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1825993	chr11:105698982-105762601	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105705200-105764600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links