Variant report

Variant	rs659654
Chromosome Location	chr11:105785817-105785818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1271104	1.00[YRI][hapmap]
rs2847179	1.00[AFR][1000 genomes]
rs473281	1.00[AFR][1000 genomes]
rs481203	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs503938	1.00[YRI][hapmap]
rs515931	1.00[YRI][hapmap]
rs517287	1.00[AFR][1000 genomes]
rs534788	1.00[YRI][hapmap]
rs539216	1.00[AFR][1000 genomes]
rs551893	1.00[YRI][hapmap]
rs558324	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs559190	0.86[AFR][1000 genomes]
rs584783	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs590908	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs592759	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs605666	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs611278	1.00[AFR][1000 genomes]
rs628230	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs630885	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs632549	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs636686	0.86[AFR][1000 genomes]
rs638554	1.00[AFR][1000 genomes]
rs640354	0.86[AFR][1000 genomes]
rs648155	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs656636	0.86[AFR][1000 genomes]
rs668564	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs669658	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs680049	1.00[AFR][1000 genomes]
rs688863	1.00[YRI][hapmap]
rs694854	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105780400-105791400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105785200-105786000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr11:105785400-105786000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:105785400-105786000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:105785400-105786000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:105785400-105786000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:105785400-105786000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:105785600-105786000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:105785600-105786000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:105785600-105786000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:105785600-105786000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:105785600-105786000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:105785600-105786000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:105785600-105786000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr11:105785600-105786000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:105785600-105786000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr11:105785600-105786000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:105785600-105786000	Flanking Active TSS	Brain Anterior Caudate	brain
19	chr11:105785600-105786000	Enhancers	Brain Germinal Matrix	brain
20	chr11:105785600-105786200	Active TSS	Brain Angular Gyrus	brain
21	chr11:105785600-105786200	Active TSS	Brain Cingulate Gyrus	brain
22	chr11:105785800-105786000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:105785800-105786000	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr11:105785800-105786000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr11:105785800-105786000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:105785800-105786000	Active TSS	Brain Substantia Nigra	brain
27	chr11:105785800-105786200	Enhancers	Fetal Lung	lung

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