Variant report

Variant	rs590908
Chromosome Location	chr11:105764732-105764733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1271104	1.00[YRI][hapmap]
rs2847179	1.00[AFR][1000 genomes]
rs473281	1.00[AFR][1000 genomes]
rs481203	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs503938	1.00[YRI][hapmap]
rs515931	1.00[YRI][hapmap]
rs517287	1.00[AFR][1000 genomes]
rs534788	1.00[YRI][hapmap]
rs539216	1.00[AFR][1000 genomes]
rs551893	1.00[YRI][hapmap]
rs558324	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs559190	0.86[AFR][1000 genomes]
rs584783	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs592759	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs605666	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs611278	1.00[AFR][1000 genomes]
rs628230	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs630885	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs632549	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs636686	0.86[AFR][1000 genomes]
rs638554	1.00[AFR][1000 genomes]
rs640354	0.86[AFR][1000 genomes]
rs648155	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs656636	0.86[AFR][1000 genomes]
rs659654	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs668564	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs669658	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs680049	1.00[AFR][1000 genomes]
rs688863	1.00[YRI][hapmap]
rs694854	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105747600-105766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105762600-105767400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105763400-105765000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:105764200-105764800	Active TSS	Brain Cingulate Gyrus	brain
5	chr11:105764600-105764800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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