Variant report

Variant	rs669658
Chromosome Location	chr11:105842028-105842029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105840068..105843090-chr11:105843881..105846613,3	K562	blood:

Variant related genes	Relation type
ENSG00000252081	Chromatin interaction

rs_ID	r²[population]
rs11226852	1.00[AMR][1000 genomes]
rs1271104	1.00[YRI][hapmap]
rs17104967	1.00[AMR][1000 genomes]
rs2847179	0.86[AFR][1000 genomes]
rs473281	0.86[AFR][1000 genomes]
rs481203	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs503938	1.00[YRI][hapmap]
rs515931	1.00[YRI][hapmap]
rs517287	0.86[AFR][1000 genomes]
rs534788	1.00[YRI][hapmap]
rs539216	0.86[AFR][1000 genomes]
rs551893	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs558324	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs559190	1.00[AFR][1000 genomes]
rs584783	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs590908	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs59230160	1.00[AMR][1000 genomes]
rs592759	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs605666	1.00[YRI][hapmap]
rs61018454	1.00[AMR][1000 genomes]
rs611278	0.86[AFR][1000 genomes]
rs61330927	1.00[AMR][1000 genomes]
rs618780	1.00[AMR][1000 genomes]
rs628230	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs630885	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs632549	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs636686	1.00[AFR][1000 genomes]
rs638554	0.86[AFR][1000 genomes]
rs640354	1.00[AFR][1000 genomes]
rs648155	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs659654	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs668564	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs680049	0.86[AFR][1000 genomes]
rs688863	1.00[YRI][hapmap]
rs694854	0.86[AFR][1000 genomes]
rs73537603	1.00[AMR][1000 genomes]
rs73537606	1.00[AMR][1000 genomes]
rs73537617	1.00[AMR][1000 genomes]
rs73537618	1.00[AMR][1000 genomes]
rs73537620	1.00[AMR][1000 genomes]
rs73537621	1.00[AMR][1000 genomes]
rs73537628	1.00[AMR][1000 genomes]
rs73537630	1.00[AMR][1000 genomes]
rs73537632	1.00[AMR][1000 genomes]
rs73542826	1.00[AMR][1000 genomes]
rs73542900	1.00[AMR][1000 genomes]
rs73544638	1.00[AMR][1000 genomes]
rs73544641	1.00[AMR][1000 genomes]
rs73550991	1.00[AMR][1000 genomes]
rs73552612	1.00[AMR][1000 genomes]
rs73552649	1.00[AMR][1000 genomes]
rs73552656	1.00[AMR][1000 genomes]
rs73552674	1.00[AMR][1000 genomes]
rs73552680	1.00[AMR][1000 genomes]
rs73552697	1.00[AMR][1000 genomes]
rs73554708	1.00[AMR][1000 genomes]
rs73554717	1.00[AMR][1000 genomes]
rs73554733	1.00[AMR][1000 genomes]
rs73554753	1.00[AMR][1000 genomes]
rs73554754	1.00[AMR][1000 genomes]
rs7951139	1.00[AMR][1000 genomes]

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105827400-105850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105838800-105842800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105839200-105843600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:105839400-105845000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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