Variant report

Variant	rs517287
Chromosome Location	chr11:105810936-105810937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2847179	1.00[AFR][1000 genomes]
rs473281	1.00[AFR][1000 genomes]
rs481203	1.00[AFR][1000 genomes]
rs539216	1.00[AFR][1000 genomes]
rs558324	1.00[AFR][1000 genomes]
rs559190	0.86[AFR][1000 genomes]
rs584783	1.00[AFR][1000 genomes]
rs590908	1.00[AFR][1000 genomes]
rs592759	1.00[AFR][1000 genomes]
rs605666	0.83[AFR][1000 genomes]
rs611278	1.00[AFR][1000 genomes]
rs628230	1.00[AFR][1000 genomes]
rs630885	1.00[AFR][1000 genomes]
rs632549	1.00[AFR][1000 genomes]
rs636686	0.86[AFR][1000 genomes]
rs638554	1.00[AFR][1000 genomes]
rs640354	0.86[AFR][1000 genomes]
rs648155	1.00[AFR][1000 genomes]
rs656636	0.86[AFR][1000 genomes]
rs659654	1.00[AFR][1000 genomes]
rs668564	1.00[AFR][1000 genomes]
rs669658	0.86[AFR][1000 genomes]
rs680049	1.00[AFR][1000 genomes]
rs694854	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105807400-105812400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:105807800-105812400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:105807800-105812600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:105807800-105813800	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:105808000-105812400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:105808400-105812400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:105808400-105813200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:105808800-105813400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:105808800-105813600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:105808800-105813800	Weak transcription	Brain Anterior Caudate	brain
13	chr11:105808800-105816800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:105808800-105816800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:105809000-105812200	Weak transcription	Fetal Lung	lung
16	chr11:105809200-105811400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:105810400-105811000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links