Variant report

Variant	rs539216
Chromosome Location	chr11:105814989-105814990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs2847179	1.00[AFR][1000 genomes]
rs473281	1.00[AFR][1000 genomes]
rs481203	1.00[AFR][1000 genomes]
rs517287	1.00[AFR][1000 genomes]
rs558324	1.00[AFR][1000 genomes]
rs559190	0.86[AFR][1000 genomes]
rs584783	1.00[AFR][1000 genomes]
rs590908	1.00[AFR][1000 genomes]
rs592759	1.00[AFR][1000 genomes]
rs605666	0.83[AFR][1000 genomes]
rs611278	1.00[AFR][1000 genomes]
rs628230	1.00[AFR][1000 genomes]
rs630885	1.00[AFR][1000 genomes]
rs632549	1.00[AFR][1000 genomes]
rs636686	0.86[AFR][1000 genomes]
rs638554	1.00[AFR][1000 genomes]
rs640354	0.86[AFR][1000 genomes]
rs648155	1.00[AFR][1000 genomes]
rs656636	0.86[AFR][1000 genomes]
rs659654	1.00[AFR][1000 genomes]
rs668564	1.00[AFR][1000 genomes]
rs669658	0.86[AFR][1000 genomes]
rs680049	1.00[AFR][1000 genomes]
rs694854	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105807600-105815800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:105807600-105819400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:105808800-105816800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:105808800-105816800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:105811000-105816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:105813000-105817200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:105813800-105817000	Weak transcription	Brain Angular Gyrus	brain
8	chr11:105814000-105818600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:105814000-105818600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:105814200-105815200	Weak transcription	Brain Anterior Caudate	brain
11	chr11:105814200-105815400	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:105814200-105818000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:105814200-105818000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:105814200-105818800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:105814400-105815400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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